pipeline:window:cryolo:picking
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
pipeline:window:cryolo:picking [2019/09/19 15:47] twagner |
pipeline:window:cryolo:picking [2020/03/13 08:50] twagner |
||
|---|---|---|---|
| Line 8: | Line 8: | ||
| However, it is much easier to select the best threshold after picking using the '' | However, it is much easier to select the best threshold after picking using the '' | ||
| </ | </ | ||
| + | |||
| + | After picking is done, you can find four folders in your specified output folder: | ||
| + | * **CBOX:** Contains a coordinate file in .cbox format each input micrograph. It contains all detected particles, even those with a confidence lower the selected confidence threshold. Additionally it contains the confidence and the estimated diameter for each particle. Importing those files into the boxmanager allows you advanced filtering e.g. according size or confidence. | ||
| + | * **EMAN:** Contains a coordinate file in .box format each input micrograph. Only particles with the an confidence higher then the selected (default: 0.3) are contained in those files. | ||
| + | * **STAR:** Contains a coordinate file in .star format each input micrograph. Only particles with the an confidence higher then the selected (default: 0.3) are contained in those files. | ||
| + | * **DISTR:** Contains the plots of confidence- and size-distribution. Moroever, it contains a machine readable text-file the summary statistics about these distributions and their raw data in separate text-files. | ||
| You will find the picked particles in your specified output directory. | You will find the picked particles in your specified output directory. | ||
| Line 30: | Line 36: | ||
| You will find the picked particles in the directory '' | You will find the picked particles in the directory '' | ||
| - | </ | + | </ |
| < | < | ||
| <div style=" | <div style=" | ||
pipeline/window/cryolo/picking.txt ยท Last modified: 2020/05/17 11:04 by twagner
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: GNU Free Documentation License 1.3
