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pipeline:window:cryolo:picking

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pipeline:window:cryolo:picking [2019/09/18 12:45]
twagner
pipeline:window:cryolo:picking [2019/10/11 17:11]
twagner
Line 8: Line 8:
 However, it is much easier to select the best threshold after picking using the ''CBOX'' files written by crYOLO as described in the next section. However, it is much easier to select the best threshold after picking using the ''CBOX'' files written by crYOLO as described in the next section.
 </note> </note>
 +
 +You will find the picked particles in your specified output directory.
  
 <html> <html>
Line 16: Line 18:
  
  
-You will find the picked particles in your specified output directory. +<html> 
- +<div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;">  
-<hidden **Alternative:** Run prediction from the command line>+<b>Alternative: Run prediction from the command line</b> 
 +</div> 
 +</html> 
 +<hidden>
 To pick all your images in the directory ''full_data'' with the  model weight file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run::  To pick all your images in the directory ''full_data'' with the  model weight file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run:: 
 <code> <code>
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 You will find the picked particles in the directory ''boxfiles''. You will find the picked particles in the directory ''boxfiles''.
-</hidden>+</hidden initialState="visible"> 
 +<html> 
 +<div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;">  
 +<b> </b> 
 +</div> 
 +</html>
pipeline/window/cryolo/picking.txt · Last modified: 2020/05/17 11:04 by twagner