User Tools

Site Tools

pipeline:window:cryolo:data_preparation

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision 		Previous revision
pipeline:window:cryolo:data_preparation [2019/12/02 09:40]
twagner 		pipeline:window:cryolo:data_preparation [2020/03/12 12:34]
twagner
Line 12: Line 12:
 We recommend that you start with 10 micrographs, then autopick your data, check the results and finally decide whether to add more micrographs to your training set. If you refine a general model, even 5 micrographs might be enough. We recommend that you start with 10 micrographs, then autopick your data, check the results and finally decide whether to add more micrographs to your training set. If you refine a general model, even 5 micrographs might be enough.
 </note> </note>
-{{:pipeline:window:cryolo_boxmanager_2.png?direct&400 |}}+{{:pipeline:window:cryolo:cryolo_boxmanager_202003.png?400 |}}
 To create your training data, crYOLO is shipped with a tool called "boxmanager". However, you can also use tools like e2boxer to create your training data. To create your training data, crYOLO is shipped with a tool called "boxmanager". However, you can also use tools like e2boxer to create your training data.
  
Line 27: Line 27:
   * "h" KEY: Toggle to make boxes invisible / visible   * "h" KEY: Toggle to make boxes invisible / visible
  
-You might want to run a low pass filter before you start picking the particles. Just press the [//Apply//] button to get a low pass filtered version of your currently selected micrograph.+You might want to run a low pass filter before you start picking the particles. Just press the [//Apply//] button to get a low pass filtered version of your currently selected micrograph. An absolute frequency cut-off of 0.1. The allowed values are 0 - 0.5. Lower values means stronger filtering.
  
 You can change the box size in the main window, by changing the number in the text field labeled //Box size://. Press [//Set//] to apply it to all picked particles. __For picking, you should the use minimum sized square which encloses your particle.__ You can change the box size in the main window, by changing the number in the text field labeled //Box size://. Press [//Set//] to apply it to all picked particles. __For picking, you should the use minimum sized square which encloses your particle.__
pipeline/window/cryolo/data_preparation.txt ยท Last modified: 2020/03/12 12:34 by twagner

Page Tools

Except where otherwise noted, content on this wiki is licensed under the following license: GNU Free Documentation License 1.3
GNU Free Documentation License 1.3 Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki