User Tools

Site Tools

pipeline:window:cryolo

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision 		Previous revision
Next revision Both sides next revision
pipeline:window:cryolo [2019/07/11 09:47]
twagner [Configuration] 		pipeline:window:cryolo [2019/07/18 08:31]
twagner [Overview]
Line 12: Line 12:
   * [[:cryolo_nets|crYOLO networks]]   * [[:cryolo_nets|crYOLO networks]]
   * [[:cryolo_config|crYOLO configuration file]]   * [[:cryolo_config|crYOLO configuration file]]
 +
 +
  
 <note> <note>
Line 17: Line 19:
  
 [[https://doi.org/10.1038/s42003-019-0437-z|Wagner, T. et al. SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM. Communications Biology 2, (2019). ]] [[https://doi.org/10.1038/s42003-019-0437-z|Wagner, T. et al. SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM. Communications Biology 2, (2019). ]]
 +
 +----
  
 We are also proud that crYOLO was recommended by F1000: We are also proud that crYOLO was recommended by F1000:
  
 +//"CrYOLO works amazingly well in identifying the true particles and distinguishing them from other high-contrast features. Thus, crYOLO provides a fast, automated tool, which gives similar reliable results as careful manual selection and outperforms template based selection procedures."//
 +<html></html>
 <html> <html>
-<a href="https://f1000.com/prime/733517098?bd=1" target="_blank"><img src="https://s3.amazonaws.com/cdn.f1000.com/images/badges/badgef1000.gif" alt="Access the recommendation on F1000Prime" id="bg" /></a>+<a href="https://f1000.com/prime/733517098?bd=1" target="_blank"><img src="https://s3.amazonaws.com/cdn.f1000.com/images/badges/badgef1000.gif" alt="Access the recommendation on F1000Prime" id="bg" />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bettina Böttcher, Biochemistry, University Würzburg</a>
 </html> </html>
 </note> </note>
Line 267: Line 273:
         "max_box_per_image":    700,         "max_box_per_image":    700,
         "num_patches":          1,         "num_patches":          1,
-        "filter":               [0.1,"tmp_filtered"]+        "filter":               ["gmodel_janni_20190703.h5",24,3,"tmp_filtered_nn"]
       }       }
     }     }
 </code> </code>
 +
 +You can download the file ''gmodel_janni_20190703.h5'' [[https://github.com/MPI-Dortmund/sphire-janni/tree/master/janni_general_models|here]]
 </hidden> </hidden>
 <html><br></html> <html><br></html>
pipeline/window/cryolo.txt · Last modified: 2021/02/19 10:00 by twagner

Page Tools

Except where otherwise noted, content on this wiki is licensed under the following license: GNU Free Documentation License 1.3
GNU Free Documentation License 1.3 Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki