Differences

This shows you the differences between two versions of the page.

--- pipeline:window:cryolo [2019/03/18 14:58]
twagner [Picking particles - Without training using a general model]
+++ pipeline:window:cryolo [2019/03/18 15:01]
twagner [Picking]
@@ Line 159: / Line 159: @@
 to the training command.
 ==== Picking ====
-You can now use the model weights saved in ''model.h5'' to pick all your images in the directory ''full_data''. To do this, run:
+You can now use the model weights saved in ''model.h5'' (//if you come to this section from another point of the tutorial, this filename might be different like ''gmodel_phosnet_X_Y.h5''//) to pick all your images in the directory ''full_data''. To do this, run:
 <code>
 cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/
 </code>
-You will find the picked particles in the directory ''boxfiles''
+You will find the picked particles in the directory ''boxfiles''.
 If you want to pick less conservatively or more conservatively you might want to change the selection threshold from the default of 0.3 to a less conservative value like 0.2 or more conservative value like 0.4 using the //-t// parameter: