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Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
pipeline:window:cryolo [2019/03/17 19:58] twagner [Picking] |
pipeline:window:cryolo [2019/03/18 15:01] twagner [Picking] |
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to the training command. | to the training command. | ||
==== Picking ==== | ==== Picking ==== | ||
- | You can now use the model weights saved in '' | + | You can now use the model weights saved in '' |
< | < | ||
cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ | cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ | ||
</ | </ | ||
- | You will find the picked particles in the directory '' | + | You will find the picked particles in the directory '' |
If you want to pick less conservatively or more conservatively you might want to change the selection threshold from the default of 0.3 to a less conservative value like 0.2 or more conservative value like 0.4 using the //-t// parameter: | If you want to pick less conservatively or more conservatively you might want to change the selection threshold from the default of 0.3 to a less conservative value like 0.2 or more conservative value like 0.4 using the //-t// parameter: | ||
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===== Picking particles - Without training using a general model ===== | ===== Picking particles - Without training using a general model ===== | ||
- | The general | + | The general |
==== Configuration==== | ==== Configuration==== | ||
The next step is to create a configuration file. Type: | The next step is to create a configuration file. Type: | ||
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==== Training on CPU ==== | ==== Training on CPU ==== | ||
- | [[downloads: | + | |
- | The fine tune mode is especially useful if you want to train crYOLO on the CPU. On my local machine it reduced the time from 12-15 hours to 4-5 hours. | + | |
+ | The fine tune mode is especially useful if you want to [[downloads: | ||
===== Picking filaments - Using a model trained for your data ===== | ===== Picking filaments - Using a model trained for your data ===== | ||
Since version 1.1.0 crYOLO supports picking filaments. | Since version 1.1.0 crYOLO supports picking filaments. |