User Tools

Site Tools


pipeline:window:cryolo

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
pipeline:window:cryolo [2019/02/13 17:46]
twagner [Data preparation]
pipeline:window:cryolo [2019/02/26 07:55]
twagner [Configuration]
Line 181: Line 181:
 Open the file with your preferred editor. Open the file with your preferred editor.
  
-For the general **[[:cryolo_nets#network_3_phosaurusnet|Phosaurus network]]** enter the following inside:+For the general **[[:cryolo_nets#network_3_phosaurusnet|Phosaurus network]]** trained for **cryo images** enter the following inside:
 <code json config.json> <code json config.json>
     {     {
Line 191: Line 191:
         "num_patches":          1,         "num_patches":          1,
         "filter":               [0.1,"tmp_filtered"]         "filter":               [0.1,"tmp_filtered"]
 +      }
 +    }
 +</code>
 +
 +For the general model for **negative stain data** please use:
 +<code json config.json>
 +    {
 +    "model" : {
 +        "architecture":         "PhosaurusNet",
 +        "input_size":           1024,
 +        "anchors":              [205,205],
 +        "max_box_per_image":    700,
 +        "num_patches":          1
 +
       }       }
     }     }
Line 222: Line 236:
 </code> </code>
  
-After tracing your training data in e2helixboxer, export them using //File -> Save//. Make sure that you export particle coordinates as this the only format supported right now (see screenshot). In the following example, it is expected that you exported into a folder called "train_annotation".+After tracing your training data in sxhelixboxer, export them using //File -> Save//. Make sure that you export particle coordinates as this the only format supported right now (see screenshot). In the following example, it is expected that you exported into a folder called "train_annotation".
  
 ==== Configuration ==== ==== Configuration ====
pipeline/window/cryolo.txt ยท Last modified: 2021/02/19 10:00 by twagner