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pipeline:window:cryolo [2019/01/02 19:48] twagner [Configuration] |
pipeline:window:cryolo [2019/02/26 07:55] twagner [Configuration] |
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Open the file with your preferred editor. | Open the file with your preferred editor. | ||
- | For the general **[[: | + | For the general **[[: |
<code json config.json> | <code json config.json> | ||
{ | { | ||
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" | " | ||
" | " | ||
+ | } | ||
+ | } | ||
+ | </ | ||
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+ | For the general model for **negative stain data** please use: | ||
+ | <code json config.json> | ||
+ | { | ||
+ | " | ||
+ | " | ||
+ | " | ||
+ | " | ||
+ | " | ||
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} | } | ||
} | } | ||
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After this is done, you have to prepare training data for your model. | After this is done, you have to prepare training data for your model. | ||
- | Right now, you have to use the e2helixboxer.py to generate the training data: | + | Right now, you have to use the sxhelixboxer.py to generate the training data: |
< | < | ||
- | e2helixboxer.py --gui my_images/ | + | sxhelixboxer.py --gui my_images/ |
</ | </ | ||
- | After tracing your training data in e2helixboxer, export them using //File -> Save//. Make sure that you export particle coordinates as this the only format supported right now (see screenshot). In the following example, it is expected that you exported into a folder called " | + | After tracing your training data in sxhelixboxer, export them using //File -> Save//. Make sure that you export particle coordinates as this the only format supported right now (see screenshot). In the following example, it is expected that you exported into a folder called " |
==== Configuration ==== | ==== Configuration ==== |