Differences

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--- pipeline:window:cryolo [2018/12/27 20:34]
twagner [Picking]
+++ pipeline:window:cryolo [2019/02/13 17:46]
twagner [Data preparation]
@@ Line 166: / Line 166: @@
 cryolo_boxmanager.py
 </code>
-Now press //File -> Open image// folder and the select the ''full_data'' directory. The first image should pop up. Then you import the box files with //File -> Import box files// and select in the ''boxfiles'' dir ''EMAN'' directory.
+Now press //File -> Open image// folder and the select the ''full_data'' directory. The first image should pop up. Then you import the box files with //File -> Import box files// and select in the ''boxfiles'' folder the ''EMAN'' directory.
@@ Line 191: / Line 191: @@
         "num_patches":          1,
         "filter":               [0.1,"tmp_filtered"]
+      }
     }
 </code>
@@ Line 216: / Line 217: @@
 After this is done, you have to prepare training data for your model.
- Right now, you have to use the e2helixboxer.py to generate the training data:
+ Right now, you have to use the sxhelixboxer.py to generate the training data:
 <code>
-e2helixboxer.py --gui my_images/*.mrc
+sxhelixboxer.py --gui my_images/*.mrc
 </code>