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pipeline:viper:sp_mask [2019/05/21 18:57] shaikh |
pipeline:viper:sp_mask [2019/05/21 18:59] (current) shaikh |
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Create a binary mask dilated by 2 pixel using the binary threshold from chimera | Create a binary mask dilated by 2 pixel using the binary threshold from chimera | ||
- | sp_mask.py input_volume | + | sp_mask.py input_volume |
Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera | Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera | ||
- | sp_mask.py input_volume | + | sp_mask.py input_volume |
Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera and masked by a soft edged cylinder to 80% (e.g. for helical reconstruction with a box size of 300) | Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera and masked by a soft edged cylinder to 80% (e.g. for helical reconstruction with a box size of 300) | ||
- | sp_mask.py input_volume | + | sp_mask.py input_volume |
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=== Main Parameters === | === Main Parameters === | ||
; input_volume : Input image : Path to the 2D image or 3D Volume (default required string) | ; input_volume : Input image : Path to the 2D image or 3D Volume (default required string) | ||
- | ; output_directory : Output directory : Output | + | ; output_directory : Output directory : Output |
; %%--%%prefix : Output prefix : Prefix of the produced files (default sp_mask) | ; %%--%%prefix : Output prefix : Prefix of the produced files (default sp_mask) |