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--- pipeline:viper:sp_mask [2019/04/02 11:58]
lusnig created
+++ pipeline:viper:sp_mask [2019/05/21 18:57]
shaikh
@@ Line 18: / Line 18: @@
 Create a binary mask dilated by 2 pixel using the binary threshold from chimera
-  sp_maks.py input_volume output_direcory --threshold=0.3 --edge_width=0 --ndilation=1
+  sp_mask.py input_volume output_direcory --threshold=0.3 --edge_width=0 --ndilation=1
 Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera
-  sp_maks.py input_volume output_direcory --threshold=0.3 --edge_width=5 --ndilation=1
+  sp_mask.py input_volume output_direcory --threshold=0.3 --edge_width=5 --ndilation=1
 Create an adapted mask dilated by 2 pixel and a soft edge of 5 pixel using the binary threshold from chimera and masked by a soft edged cylinder to 80% (e.g. for helical reconstruction with a box size of 300)
-  sp_maks.py input_volume output_direcory --threshold=0.3 --edge_width=5 --ndilation=1 --second_mask_shape=cylinder --s_radius=40 --s_nx=240 --s_ny=240 --s_nz=240 --s_ndilation=1 --s_edge_width=5
+  sp_mask.py input_volume output_direcory --threshold=0.3 --edge_width=5 --ndilation=1 --second_mask_shape=cylinder --s_radius=40 --s_nx=240 --s_ny=240 --s_nz=240 --s_ndilation=1 --s_edge_width=5
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