pipeline:utilities:sxrelion2sphire

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pipeline:utilities:sxrelion2sphire [2019/04/02 10:16]
lusnig
pipeline:utilities:sxrelion2sphire [2019/04/02 10:57]
lusnig [Output]
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 || **File Name** || **Discription** || || **File Name** || **Discription** ||
-|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:​cter:​sp_cter|sp_cter]], [[pipeline:​window:​sp_window|sp_window]],​ [[pipeline:​movie:​sp_unblur|sp_unblur]],​ [[pipeline:​movie:​sp_summovie|sp_summovie]],​ and [[pipeline:​utilities:​sp_pipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || +|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:​cter:​sxcter|sp_cter]], [[pipeline:​window:​sxwindow|sp_window]],​ [[pipeline:​movie:​sxunblur|sp_unblur]],​ [[pipeline:​movie:​sxsummovie|sp_summovie]],​ and [[pipeline:​utilities:​sxpipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || 
-|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:​cter:​sp_gui_cter|sp_gui_cter]] and [[pipeline:​window:​sp_window|sp_window]]. (requires CTF Estimation Category) || +|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:​cter:​sxgui_cter|sp_gui_cter]] and [[pipeline:​window:​sxwindow|sp_window]]. (requires CTF Estimation Category) || 
-|| Coordinates/​*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sp_window|sp_window]]. (requires Particle Extraction Category) || +|| Coordinates/​*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sxwindow|sp_window]]. (requires Particle Extraction Category) || 
-|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sp_rewindow|sp_rewindow]]. (requires Particle Extraction Category) ||+|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sxrewindow|sp_rewindow]]. (requires Particle Extraction Category) ||
 || EMAN2DB/​*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) || || EMAN2DB/​*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) ||
  
  • pipeline/utilities/sxrelion2sphire.txt
  • Last modified: 2019/04/02 10:57
  • by lusnig