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pipeline:utilities:sxrelion2sphire

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pipeline:utilities:sxrelion2sphire [2019/04/02 10:16]
lusnig 		pipeline:utilities:sxrelion2sphire [2019/04/02 10:56]
lusnig [Output]
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 || **File Name** || **Discription** || || **File Name** || **Discription** ||
-|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:cter:sp_cter|sp_cter]], [[pipeline:window:sp_window|sp_window]], [[pipeline:movie:sp_unblur|sp_unblur]], [[pipeline:movie:sp_summovie|sp_summovie]], and [[pipeline:utilities:sp_pipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || +|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:cter:sxcter|sp_cter]], [[pipeline:window:sxwindow|sp_window]], [[pipeline:movie:sxunblur|sp_unblur]], [[pipeline:movie:sxsummovie|sp_summovie]], and [[pipeline:utilities:sxpipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || 
-|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:cter:sp_gui_cter|sp_gui_cter]] and [[pipeline:window:sp_window|sp_window]]. (requires CTF Estimation Category) ||+|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:cter:sxgui_cter|sp_gui_cter]] and [[pipeline:window:sxwindow|sp_window]]. (requires CTF Estimation Category) ||
 || Coordinates/*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sp_window|sp_window]]. (requires Particle Extraction Category) || || Coordinates/*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sp_window|sp_window]]. (requires Particle Extraction Category) ||
-|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sp_rewindow|sp_rewindow]]. (requires Particle Extraction Category) ||+|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sxrewindow|sp_rewindow]]. (requires Particle Extraction Category) ||
 || EMAN2DB/*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) || || EMAN2DB/*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) ||
  
pipeline/utilities/sxrelion2sphire.txt · Last modified: 2019/04/02 10:57 by lusnig

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