pipeline:utilities:sxrelion2sphire

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Last revision Both sides next revision
pipeline:utilities:sxrelion2sphire [2019/04/02 10:16]
lusnig
pipeline:utilities:sxrelion2sphire [2019/04/02 10:56]
lusnig [Output]
Line 47: Line 47:
  
 || **File Name** || **Discription** || || **File Name** || **Discription** ||
-|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:​cter:​sp_cter|sp_cter]], [[pipeline:​window:​sp_window|sp_window]],​ [[pipeline:​movie:​sp_unblur|sp_unblur]],​ [[pipeline:​movie:​sp_summovie|sp_summovie]],​ and [[pipeline:​utilities:​sp_pipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || +|| *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:​cter:​sxcter|sp_cter]], [[pipeline:​window:​sxwindow|sp_window]],​ [[pipeline:​movie:​sxunblur|sp_unblur]],​ [[pipeline:​movie:​sxsummovie|sp_summovie]],​ and [[pipeline:​utilities:​sxpipe_organize_micrographs|sp_pipe organize_micrographs]]. (requires Micrographs Category) || 
-|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:​cter:​sp_gui_cter|sp_gui_cter]] and [[pipeline:​window:​sp_window|sp_window]]. (requires CTF Estimation Category) ||+|| *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:​cter:​sxgui_cter|sp_gui_cter]] and [[pipeline:​window:​sxwindow|sp_window]]. (requires CTF Estimation Category) ||
 || Coordinates/​*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sp_window|sp_window]]. (requires Particle Extraction Category) || || Coordinates/​*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sp_window|sp_window]]. (requires Particle Extraction Category) ||
-|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sp_rewindow|sp_rewindow]]. (requires Particle Extraction Category) ||+|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:​window:​sxrewindow|sp_rewindow]]. (requires Particle Extraction Category) ||
 || EMAN2DB/​*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) || || EMAN2DB/​*_stack.bdb || Per-micrograph virtual stacks of particle meta information in bdb format (only when %%--%%do_not_create_stack is not used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) ||
  
  • pipeline/utilities/sxrelion2sphire.txt
  • Last modified: 2019/04/02 10:57
  • by lusnig