pipeline:utilities:sxpipe_restacking

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pipeline:utilities:sxpipe_restacking [2019/04/02 10:59]
lusnig [Output]
pipeline:utilities:sxpipe_restacking [2019/04/02 10:59] (current)
lusnig [Output]
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 || micrographs_in_output_dataset.txt || Micrograph selection text file containing the list of micrograph in the output dataset. This file can be used as micrograph selection text file of [[pipeline:​cter:​sxcter|sp_cter]],​ [[pipeline:​cter:​sxgui_cter|sp_gui_cter]],​ [[pipeline:​window:​sxwindow|sp_window]],​ and [[pipeline:​utilities:​sxpipe_organize_micrographs|sp_pipe organize_micrographs]]. || || micrographs_in_output_dataset.txt || Micrograph selection text file containing the list of micrograph in the output dataset. This file can be used as micrograph selection text file of [[pipeline:​cter:​sxcter|sp_cter]],​ [[pipeline:​cter:​sxgui_cter|sp_gui_cter]],​ [[pipeline:​window:​sxwindow|sp_window]],​ and [[pipeline:​utilities:​sxpipe_organize_micrographs|sp_pipe organize_micrographs]]. ||
 || input_stack_particle_id_for_output_dataset.txt || Particle selection text file containing the list of particle image IDs used for generating the output dataset from the input stack. This file can be used as particle selection list text file of [[pipeline:​utilities:​e2bdb|e2bdb]]. || || input_stack_particle_id_for_output_dataset.txt || Particle selection text file containing the list of particle image IDs used for generating the output dataset from the input stack. This file can be used as particle selection list text file of [[pipeline:​utilities:​e2bdb|e2bdb]]. ||
-|| ctf_params_for_output_dataset.txt || CTF parameters text file containing CTF parameters of all particle images in the output dateset. This projection parameters can be used as inputs of [[pipeline:​window:​sp_window|sp_window]] or imported to the reboxed stack using [[pipeline:​utilities:​sp_header|sp_header]]. || +|| ctf_params_for_output_dataset.txt || CTF parameters text file containing CTF parameters of all particle images in the output dateset. This projection parameters can be used as inputs of [[pipeline:​window:​sxwindow|sp_window]] or imported to the reboxed stack using [[pipeline:​utilities:​sxheader|sp_header]]. || 
-|| original_proj_params_for_output_dataset.txt || Projection parameters text file containing **original** projection parameters of all particle images in the output dateset. This projection parameters can be imported to the reboxed stack using [[pipeline:​utilities:​sp_header|sp_header]]. || +|| original_proj_params_for_output_dataset.txt || Projection parameters text file containing **original** projection parameters of all particle images in the output dateset. This projection parameters can be imported to the reboxed stack using [[pipeline:​utilities:​sxheader|sp_header]]. || 
-|| centered_proj_params_for_output_dataset.txt || Projection parameters text file containing **centered** projection parameters of all particle images in the output dateset. This projection parameters can be imported to the reboxed stack using [[pipeline:​utilities:​sp_header|sp_header]]. || +|| centered_proj_params_for_output_dataset.txt || Projection parameters text file containing **centered** projection parameters of all particle images in the output dateset. This projection parameters can be imported to the reboxed stack using [[pipeline:​utilities:​sxheader|sp_header]]. || 
-|| original/​${MICROGRAPH_ROOTNAME}_original.box || The list of original coordinates stored in the headers of particle images in the stack. These files can be used as inputs of [[pipeline:​window:​sp_window|sp_window]]. || +|| original/​${MICROGRAPH_ROOTNAME}_original.box || The list of original coordinates stored in the headers of particle images in the stack. These files can be used as inputs of [[pipeline:​window:​sxwindow|sp_window]]. || 
-|| centered/​${MICROGRAPH_ROOTNAME}_centered.box || The list of centered (or transformed) coordinates. These files can be used as inputs of [[pipeline:​window:​sp_window|sp_window]]. || +|| centered/​${MICROGRAPH_ROOTNAME}_centered.box || The list of centered (or transformed) coordinates. These files can be used as inputs of [[pipeline:​window:​sxwindow|sp_window]]. || 
-|| EMAN2DB/​${VSTACK_BASENAME}.dbd || The output virtual stack. This stack can be directly used as input stack of [[pipeline:​meridien:​sp_meridien|sp_meridien]] local refinement. ||+|| EMAN2DB/​${VSTACK_BASENAME}.dbd || The output virtual stack. This stack can be directly used as input stack of [[pipeline:​meridien:​sxmeridien|sp_meridien]] local refinement. ||
  
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  • pipeline/utilities/sxpipe_restacking.txt
  • Last modified: 2019/04/02 10:59
  • by lusnig