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pipeline:utilities:sxpdb2em

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pipeline:utilities:sxpdb2em [2018/08/22 11:05]
fmerino
pipeline:utilities:sxpdb2em [2019/04/02 09:33] (current)
lusnig
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 ~~NOTOC~~ ~~NOTOC~~
  
-===== sxpdb2em =====+===== sp_pdb2em =====
 PDB File Conversion: Converts an atomic model stored in a PDB file into a simulated electron density map. The coordinates (0,0,0) in PDB space will map to the center of the volume. PDB File Conversion: Converts an atomic model stored in a PDB file into a simulated electron density map. The coordinates (0,0,0) in PDB space will map to the center of the volume.
  
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 Usage in command line Usage in command line
  
-  sxpdb2em.py  input_pdb  output_hdf  --apix=PIXEL_SIZE  --box=BOX_SIZE  --het  --chains=CHAIN_STRING --center=CENTERING_METHOD  --O  --tr0=MATRIX_FILE_PATH  --set_apix_value=PIXEL_SIZE_STRING  --quiet+  sp_pdb2em.py  input_pdb  output_hdf  --apix=PIXEL_SIZE  --box=BOX_SIZE  --het  --chains=CHAIN_STRING --center=CENTERING_METHOD  --O  --tr0=MATRIX_FILE_PATH  --set_apix_value=PIXEL_SIZE_STRING  --quiet
  
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 ===== Typical usage ===== ===== Typical usage =====
  
-sxpdb2em does not support MPI.+sp_pdb2em does not support MPI.
  
-  sxpdb2em.py  tRNA.pdb  tRNA.hdf  --apix=2.26  --box=150  --center=c  --O  --quiet  --tr0=<'filename'>  --het+  sp_pdb2em.py  tRNA.pdb  tRNA.hdf  --apix=2.26  --box=150  --center=c  --O  --quiet  --tr0=<'filename'>  --het
  
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 ==== Files ==== ==== Files ====
-sparx/bin/sxpdb2em.py+sparx/bin/sp_pdb2em.py
  
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pipeline/utilities/sxpdb2em.txt ยท Last modified: 2019/04/02 09:33 by lusnig