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pipeline:utilities:sxheader

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pipeline:utilities:sxheader [2018/08/22 10:59]
fmerino 		pipeline:utilities:sxheader [2019/04/02 10:08] (current)
lusnig
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 ~~NOTOC~~ ~~NOTOC~~
  
-===== sxheader =====+===== sp_header =====
 Header Operations: Perform operations on headers of hdf or bdb file. Header Operations: Perform operations on headers of hdf or bdb file.
  
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 Usage in command line Usage in command line
  
-  sxheader.py  stack  --params=PARAMS_NAME_LIST  --import=INPUT_PARAMS_PATH  --export==OUTPUT_PARAMS_FILE  --delete  --zero  --one  --set  --consecutive  --randomize  --rand_alpha  --print  --backup  --restore  --suffix=PARAMS_FILE_SUFFIX+  sp_header.py  stack  --params=PARAMS_NAME_LIST  --import=INPUT_PARAMS_PATH  --export==OUTPUT_PARAMS_FILE  --delete  --zero  --one  --set  --consecutive  --randomize  --rand_alpha  --print  --backup  --restore  --suffix=PARAMS_FILE_SUFFIX
  
 \\ \\
 ===== Typical usage ===== ===== Typical usage =====
  
-sxheader does not support MPI.+sp_header does not support MPI.
  
 \\ __Print parameterrs__: \\ __Print parameterrs__:
-  sxheader.py bdb:file --print --params=xform.projection+  sp_header.py bdb:file --print --params=xform.projection
  
 \\ __Export ctf values to a text file__: \\ __Export ctf values to a text file__:
-  sxheader.py bdb:file --export=ctf.txt --params=ctf+  sp_header.py bdb:file --export=ctf.txt --params=ctf
  
 \\ __Import ctf values from a text file and set them to headers__: \\ __Import ctf values from a text file and set them to headers__:
-  sxheader.py bdb:file --import=ctf.txt --params=ctf+  sp_header.py bdb:file --import=ctf.txt --params=ctf
  
 \\ __Backup current alignment parameters__: \\ __Backup current alignment parameters__:
-  sxheader.py bdb:file --backup --suffix=_original --params=xform.projection+  sp_header.py bdb:file --backup --suffix=_original --params=xform.projection
  
 \\ __Restore original alignment parameters__: \\ __Restore original alignment parameters__:
-  sxheader.py bdb:file --restore --params=xform.projection_original+  sp_header.py bdb:file --restore --params=xform.projection_original
  
 Note: command will recognize the valid name of a parameters and truncate the suffix, thus in this case the restored parameter will be xform_projection. Note: command will recognize the valid name of a parameters and truncate the suffix, thus in this case the restored parameter will be xform_projection.
  
 \\ __Delete parameters__: \\ __Delete parameters__:
-  sxheader.py bdb:file --delete --params=xform.projection_original+  sp_header.py bdb:file --delete --params=xform.projection_original
  
 Note: the parameters will be permanently deleted and cannot be recovered. Note: the parameters will be permanently deleted and cannot be recovered.
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 \\ \\
 ==== Files ==== ==== Files ====
-sparx/bin/sxheader.py+sparx/bin/sp_header.py
  
 \\ \\
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 \\ \\
 +
pipeline/utilities/sxheader.txt ยท Last modified: 2019/04/02 10:08 by lusnig

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