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pipeline:utilities:start [2018/08/22 12:22] fmerino |
pipeline:utilities:start [2019/04/02 12:45] lusnig |
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===== Utilities ===== | ===== Utilities ===== | ||
+ | ; [[pipeline: | ||
; [[e2display|Display Data]] : Displays images, volumes, or 1D plots. | ; [[e2display|Display Data]] : Displays images, volumes, or 1D plots. | ||
; [[sxpdb2em|PDB File Conversion]] : Converts an PDB atomic model into a simulated density map. | ; [[sxpdb2em|PDB File Conversion]] : Converts an PDB atomic model into a simulated density map. | ||
; [[sxrelion2sphire|RELION to SPHIRE Conversion]] : Convert parameters from RELION to SPHIRE formats. | ; [[sxrelion2sphire|RELION to SPHIRE Conversion]] : Convert parameters from RELION to SPHIRE formats. | ||
- | ; [[sxprocess|Adaptive 3D Mask]] : Generates a soft-edged mask for a given volume. | + | ; [[sp_sphire2relion|SPHIRE to RELION |
- | ; [[sxprocess|Binary 3D Mask]] : Create a binary 3D mask, e.g. for focused classification. | + | ; [[pipeline: |
- | ; [[sxprocess|Change Size of Image or Volume]] : Resample image or volume | + | ; [[pipeline: |
- | ; [[e2proc3d|Window Image or Volume]] : Window (pad or clip) image or volume | + | ; [[pipeline: |
- | ; [[sxpipe_moon_eliminator|Moon Eliminator]] : Removes disconnected regions from a 3D Map and optionally creates a mask. | + | ; [[pipeline: |
+ | |||
; [[sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera. | ; [[sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera. | ||
+ | ; [[pipeline: | ||
+ | ; [[pipeline: | ||
; [[sxprocess|PostRefiner (Single Volumes)]] : Enhancing the power spectrum of any single volumes (Single Volumes Mode). | ; [[sxprocess|PostRefiner (Single Volumes)]] : Enhancing the power spectrum of any single volumes (Single Volumes Mode). | ||
- | ; [[pipeline: | ||
; [[pipeline: | ; [[pipeline: | ||
; [[sxheader|Header Operations]] : Perform operations on headers of hdf or bdb image file. | ; [[sxheader|Header Operations]] : Perform operations on headers of hdf or bdb image file. | ||
; [[e2bdb|Create Virtual Stack]] : Make a virtual BDB image stack. | ; [[e2bdb|Create Virtual Stack]] : Make a virtual BDB image stack. | ||
; [[sxpipe_organize_micrographs|Organize Micrographs/ | ; [[sxpipe_organize_micrographs|Organize Micrographs/ | ||
+ | ; [[pipeline: | ||
+ | ; [[pipeline: | ||
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