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+ | ~~NOTOC~~ | ||
+ | |||
+ | ===== sp_sphire2relion ===== | ||
+ | SPHIRE to RELION Conversion : Convert SPHIRE parameters to RELION. | ||
+ | |||
+ | \\ | ||
+ | ===== Usage ===== | ||
+ | |||
+ | Usage in command line | ||
+ | |||
+ | sp_sphire2relion.py output_dir --output_name=OUTPUT_NAME --particle_stack=PARTICLE_STACK | ||
+ | \\ | ||
+ | ===== Typical usage ===== | ||
+ | |||
+ | Fill it. | ||
+ | |||
+ | \\ | ||
+ | ===== Input ===== | ||
+ | === Main Parameters === | ||
+ | ; output_dir : Output directory: Output directory. (default required string) | ||
+ | ; %%--%%output_name : Output star file name: Output star file name. (default none) | ||
+ | ; %%--%%particle_stack : Particle stack: | ||
+ | ; %%--%%params_2d_file : 2D params file: 2D alignment parameters. (default none) : %%--%%particle_stack!=none %%--%%params_3d_file==none | ||
+ | ; %%--%%params_3d_file : 3D params file: 3D projection parameters. (default none) : %%--%%particle_stack!=none %%--%%params_2d_file==none | ||
+ | ; %%--%%params_3d_index_file : 3D params index file: Index file for the 3d params. Used to find the associated particle stack entry in the params file. In the meridien directories, | ||
+ | ; %%--%%params_3d_chunk_file_0 : First 3D params chunk file: First chunk file for the 3d params. Used to extract the _rlnRandomSubset information. In the meridien directories, | ||
+ | ; %%--%%params_3d_chunk_file_1 : Second 3D params chunk file: Second chunk file for the 3d params. Used to extract the _rlnRandomSubset information. In the meridien directories, | ||
+ | |||
+ | |||
+ | |||
+ | \\ | ||
+ | === Advanced Parameters === | ||
+ | ; | ||
+ | ;%%--%%list : Include particle list: List of particles to include. Requires --particle_stack. Cannot be used together with --exlist. (default None) : %%--%%particle_stack!=None %%--%%exlist==None | ||
+ | ; | ||
+ | |||
+ | \\ | ||
+ | ===== Output ===== | ||
+ | |||
+ | \\ | ||
+ | ===== Description ===== | ||
+ | |||
+ | \\ | ||
+ | ==== Method ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Reference ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Developer Notes ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Author / Maintainer ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Keywords ==== | ||
+ | Category 1:: APPLICATIONS | ||
+ | |||
+ | \\ | ||
+ | ==== Files ==== | ||
+ | sparx/ | ||
+ | |||
+ | \\ | ||
+ | ==== See also ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Maturity ==== | ||
+ | Beta:: Under evaluation and testing. Please let us know if there are any bugs. | ||
+ | |||
+ | \\ | ||
+ | ==== Bugs ==== | ||
+ | There are no known bugs so far. | ||
+ | |||
+ | \\ | ||