pipeline:utilities:sp_separate_class

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pipeline:utilities:sp_separate_class [2019/09/12 16:43]
shaikh [Output]
pipeline:utilities:sp_separate_class [2019/09/12 16:45] (current)
shaikh
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 ===== Input ===== ===== Input =====
 === Main Parameters === === Main Parameters ===
-  ; input_class_avgs : Set of 2D class averages, with particle-membership information in header. (default required string)+  ; input_class_avgs : Set of 2D class averages, with particle-membership information in header. (default required string)[{{ :​pipeline:​utilities:​ordered_class_averages.png?​400|ordered_class_averages.hdf of TcdA from ISAC}}]
   ; input_image_stack : Particle image stack. (default required string)   ; input_image_stack : Particle image stack. (default required string)
   ; output_directory : Directory where outputs will be written. (default required string)   ; output_directory : Directory where outputs will be written. (default required string)
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 \\ \\
 ===== Output ===== ===== Output =====
-  ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ :​pipeline:​utilities:​ordered_class_averages.png?400|ordered_class_averages.hdf ​of TcdA from ISAC}}]+  ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ :​pipeline:​utilities:​stkalign_029.png?400|Montage ​of particles ​from class 29, using a filter radius of 0.05 px^-1}}]
   ; docclass???​.txt : List of particles for each class, one file per class   ; docclass???​.txt : List of particles for each class, one file per class
   ; params_combined.txt : (Optional) Combined particle alignment parameters   ; params_combined.txt : (Optional) Combined particle alignment parameters
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   ; stkalign_???​.bdb : (Optional) Virtual stacks of aligned and optionally filtered particles for each class   ; stkalign_???​.bdb : (Optional) Virtual stacks of aligned and optionally filtered particles for each class
    
-[{{ :​pipeline:​utilities:​stkalign_029.png?​400|Montage of particles from class 29, using a filter radius of 0.05 px^-1}}]+
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  • pipeline/utilities/sp_separate_class.txt
  • Last modified: 2019/09/12 16:45
  • by shaikh