pipeline:utilities:sp_eval_isac

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pipeline:utilities:sp_eval_isac [2020/07/24 23:21]
shaikh
pipeline:utilities:sp_eval_isac [2020/10/21 10:17] (current)
shaikh
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 ===== Typical usage ===== ===== Typical usage =====
 [{{ :​pipeline:​utilities:​regular-evil-isac.png?​275|Regular ISAC (top) vs. Evil ISAC (bottom)}}] [{{ :​pipeline:​utilities:​regular-evil-isac.png?​275|Regular ISAC (top) vs. Evil ISAC (bottom)}}]
-The purpose of sp_separate_class.py is to: +The purpose of sp_eval_isac.py is to: 
   : write particle-membership lists for each class   : write particle-membership lists for each class
   : write separate stacks for each class, ​   : write separate stacks for each class, ​
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 \\ __7. Apply a Gaussian band-pass filter to an image stack (e.g., class averages)__:​[{{ :​pipeline:​utilities:​plotbandpass.png?​400|Shape of the band-pass filter}}] \\ __7. Apply a Gaussian band-pass filter to an image stack (e.g., class averages)__:​[{{ :​pipeline:​utilities:​plotbandpass.png?​400|Shape of the band-pass filter}}]
-  sp_eval_isac.py input_class_avgs output_directory --particles=input_image_stack ​--align_isac_dir=isac_directory --write_centered --applyparams=centering_mode+  sp_eval_isac.py input_class_avgs output_directory --apix=pixel_size ​--bandpass_radius=bandpass_radius_angstroms
  
 The default beautifier settings (CTF-correction using a Wiener filter and power-spectrum adjustment) will amplify the low-resolution data, and may make the averages more difficult to interpret. A band-pass filter will dampen the lowest-resolution data, and also the high-resolution noise. This filtration may be helpful for recognizing smaller complexes. The default beautifier settings (CTF-correction using a Wiener filter and power-spectrum adjustment) will amplify the low-resolution data, and may make the averages more difficult to interpret. A band-pass filter will dampen the lowest-resolution data, and also the high-resolution noise. This filtration may be helpful for recognizing smaller complexes.
  • pipeline/utilities/sp_eval_isac.1595625693.txt.gz
  • Last modified: 2020/07/24 23:21
  • by shaikh