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+ | ~~NOTOC~~ | ||
+ | |||
+ | ===== sp_batch ===== | ||
+ | Batch Pipeline Execution: Run jobs that wait with the execution on each other. | ||
+ | |||
+ | \\ | ||
+ | ===== Usage ===== | ||
+ | |||
+ | Usage in command line | ||
+ | |||
+ | sp_batch.py | ||
+ | \\ | ||
+ | ===== Typical usage ===== | ||
+ | |||
+ | sp_batch exists only in non-MPI version. | ||
+ | |||
+ | The pipeline directory can be easily added within the GUI. | ||
+ | |||
+ | Run sp_batch locally with bash: | ||
+ | |||
+ | sp_batch.py bash input_run_dir | ||
+ | |||
+ | Run sp_batch within a SGE/ | ||
+ | |||
+ | sp_batch.py ' | ||
+ | |||
+ | Run sp_batch within a SGE/ | ||
+ | |||
+ | sp_batch.py ' | ||
+ | |||
+ | \\ | ||
+ | ===== Input ===== | ||
+ | === Main Parameters === | ||
+ | ; submission_command : Submission command : Submission command, e.g., qsub, qsub -V, sbatch, bash (default required string) | ||
+ | ; input_run_dir: | ||
+ | ; %%--%%hold_flag: | ||
+ | ; %%--%%first_hold_number: | ||
+ | |||
+ | \\ | ||
+ | ===== Output ===== | ||
+ | Content of the commands in the PIPELINE folder. | ||
+ | |||
+ | \\ | ||
+ | ===== Description ===== | ||
+ | |||
+ | \\ | ||
+ | ==== Method ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Reference ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Developer Notes ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Author / Maintainer ==== | ||
+ | Markus Stabrin | ||
+ | |||
+ | \\ | ||
+ | ==== Keywords ==== | ||
+ | Category 1:: APPLICATIONS | ||
+ | |||
+ | \\ | ||
+ | ==== Files ==== | ||
+ | sparx/ | ||
+ | |||
+ | \\ | ||
+ | ==== See also ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Maturity ==== | ||
+ | Beta:: Under evaluation and testing. Please let us know if there are any bugs. | ||
+ | |||
+ | \\ | ||
+ | ==== Bugs ==== | ||
+ | There are no known bugs so far. | ||
+ | |||
+ | \\ | ||