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pipeline:utilities:e2bdb [2018/02/21 13:13] moriya |
pipeline:utilities:e2bdb [2019/04/02 09:20] (current) lusnig |
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Usage in command line | Usage in command line | ||
- | e2bdb.py | + | e2bdb.py |
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e2bdb.py --dump refine_01# | e2bdb.py --dump refine_01# | ||
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- | 6. Make a ' | + | 6. Make a ' |
e2bdb.py bdb:db1 bdb:db2 --makevstack=bdb: | e2bdb.py bdb:db1 bdb:db2 --makevstack=bdb: | ||
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e2bdb.py . --makevstack=bdb: | e2bdb.py . --makevstack=bdb: | ||
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- | 7. Append to or create a ' | + | 7. Append to or create a ' |
e2bdb.py bdb:db1 bdb:db2 --appendvstack=bdb: | e2bdb.py bdb:db1 bdb:db2 --appendvstack=bdb: | ||
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- | 8. Creates a new virtual | + | 8. Creates a new virtual |
e2bdb.py bdb:#db1 bdb:#db2 --makevstack=bdb: | e2bdb.py bdb:#db1 bdb:#db2 --makevstack=bdb: | ||
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; %%--%%extractplots : Extract plots as text files: If a database contains sets of plots, such as bdb: | ; %%--%%extractplots : Extract plots as text files: If a database contains sets of plots, such as bdb: | ||
; %%--%%check : Check for self-consistency and errors: Check for self-consistency and errors in the structure of specified databases. (default False) | ; %%--%%check : Check for self-consistency and errors: Check for self-consistency and errors in the structure of specified databases. (default False) | ||
- | ; %%--%%merge : Merge database contents: Merge the contents of BDB 2-N into BDB 1 (including | + | ; %%--%%merge : Merge database contents: Merge the contents of bdb 2-N into bdb 1 (including |
- | ; %%--%%makevstack : Output virtual image stack: Make a ' | + | ; %%--%%makevstack : Output virtual image stack: Make a ' |
- | ; %%--%%appendvstack : Append to or create virtual image stack: Append to or create a virtual | + | ; %%--%%appendvstack : Append to or create virtual image stack: Append to or create a virtual |
- | ; %%--%%list : Image selection file: Input selection text file containing a list of selected image IDs (or indexes of the data subset) to create a new virtual | + | ; %%--%%list : Image selection file: Input selection text file containing a list of selected image IDs (or indexes of the data subset) to create a new virtual |
- | ; %%--%%exlist : Image exclusion file: Input exclusion text file containing a list of excluded image IDs (or indexes of the data subset) to create a new virtual | + | ; %%--%%exlist : Image exclusion file: Input exclusion text file containing a list of excluded image IDs (or indexes of the data subset) to create a new virtual |
; %%--%%restore : Write changes in virtual stack back to original stack: Write changes in the derived virtual stack back to the original stack. (default none) | ; %%--%%restore : Write changes in virtual stack back to original stack: Write changes in the derived virtual stack back to the original stack. (default none) | ||
; %%--%%ppid : Set PID of parent process: Set the PID of the parent process, used for cross platform PPID. (default -1) | ; %%--%%ppid : Set PID of parent process: Set the PID of the parent process, used for cross platform PPID. (default -1) | ||
; %%--%%checkctf : Verifies CTF entry: Verify that all images in the file contain CTF information, | ; %%--%%checkctf : Verifies CTF entry: Verify that all images in the file contain CTF information, | ||
- | ; %%--%%step : Processes only subset: Specify < | + | ; %%--%%step : Processes only subset: Specify < |
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