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pipeline:utilities:e2bdb

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pipeline:utilities:e2bdb [2018/02/21 13:13]
moriya 		pipeline:utilities:e2bdb [2018/08/22 10:43]
fmerino
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 Usage in command line Usage in command line
  
-  e2bdb.py  --cleanup  --force  --delete  --all  --long  --short  --filt='SUBSTRING'  --filtexclude='SUBSTRING'  --match='REGULAR_EXPRESSION'  --exclude='BDB_NAME'  --dump  --smalldump  --extractplots  --check  --merge  --makevstack='bdb:/Home/user/project#output'  --appendvstack='bdb:output'  --list='abc.txt'  --exlist='xyz.txt'  --restore='bdb:vstack'  --ppid=PPID  --checkctf  --step=STEP  --nocache  --verbose=LEVEL+  e2bdb.py  --cleanup  --force  --delete  --all  --long  --short  --filt='SUBSTRING'  --filtexclude='SUBSTRING'  --match='REGULAR_EXPRESSION'  --exclude='bdb_NAME'  --dump  --smalldump  --extractplots  --check  --merge  --makevstack='bdb:/Home/user/project#output'  --appendvstack='bdb:output'  --list='abc.txt'  --exlist='xyz.txt'  --restore='bdb:vstack'  --ppid=PPID  --checkctf  --step=STEP  --nocache  --verbose=LEVEL
  
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   e2bdb.py --dump refine_01#register    e2bdb.py --dump refine_01#register 
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- 6. Make a 'virtual' BDB image stack from one or more other stacks.+ 6. Make a 'virtual' bdb image stack from one or more other stacks.
  
   e2bdb.py bdb:db1 bdb:db2 --makevstack=bdb:db3    e2bdb.py bdb:db1 bdb:db2 --makevstack=bdb:db3 
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   e2bdb.py . --makevstack=bdb:data --filt=db    e2bdb.py . --makevstack=bdb:data --filt=db 
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- 7. Append to or create a 'virtual' BDB image stack with its own metadata.+ 7. Append to or create a 'virtual' bdb image stack with its own metadata.
  
   e2bdb.py bdb:db1 bdb:db2 --appendvstack=bdb:db3    e2bdb.py bdb:db1 bdb:db2 --appendvstack=bdb:db3 
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- 8. Creates a new virtual BDB image stack by extracting images whose IDs are listed in the specified ASCII file from existed virtual stacks.+ 8. Creates a new virtual bdb image stack by extracting images whose IDs are listed in the specified ASCII file from existed virtual stacks.
  
   e2bdb.py bdb:#db1 bdb:#db2 --makevstack=bdb:.#db3 --list=abc.txt    e2bdb.py bdb:#db1 bdb:#db2 --makevstack=bdb:.#db3 --list=abc.txt 
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   ; %%--%%extractplots : Extract plots as text files: If a database contains sets of plots, such as bdb:refine_xx#convergence.results, this will extract the plots as text files. (default False)   ; %%--%%extractplots : Extract plots as text files: If a database contains sets of plots, such as bdb:refine_xx#convergence.results, this will extract the plots as text files. (default False)
   ; %%--%%check : Check for self-consistency and errors: Check for self-consistency and errors in the structure of specified databases. (default False)   ; %%--%%check : Check for self-consistency and errors: Check for self-consistency and errors in the structure of specified databases. (default False)
-  ; %%--%%merge : Merge database contents: Merge the contents of BDB 2-N into BDB 1 (including BDB 1's contents). (default False) +  ; %%--%%merge : Merge database contents: Merge the contents of bdb 2-N into bdb 1 (including bdb 1's contents). (default False) 
-  ; %%--%%makevstack : Output virtual image stack: Make a 'virtual' BDB image stack with the specified name from one or more other stacks. (default none) +  ; %%--%%makevstack : Output virtual image stack: Make a 'virtual' bdb image stack with the specified name from one or more other stacks. (default none) 
-  ; %%--%%appendvstack : Append to or create virtual image stack: Append to or create a virtual BDB image stack with its own metadata. (default none) +  ; %%--%%appendvstack : Append to or create virtual image stack: Append to or create a virtual bdb image stack with its own metadata. (default none) 
-  ; %%--%%list : Image selection file: Input selection text file containing a list of selected image IDs (or indexes of the data subset) to create a new virtual BDB image stack from an existed stack or virtual stack. (default none) +  ; %%--%%list : Image selection file: Input selection text file containing a list of selected image IDs (or indexes of the data subset) to create a new virtual bdb image stack from an existed stack or virtual stack. (default none) 
-  ; %%--%%exlist : Image exclusion file: Input exclusion text file containing a list of excluded image IDs (or indexes of the data subset) to create a new virtual BDB image stacks from an existed stack or virtual stack. (default none)+  ; %%--%%exlist : Image exclusion file: Input exclusion text file containing a list of excluded image IDs (or indexes of the data subset) to create a new virtual bdb image stacks from an existed stack or virtual stack. (default none)
   ; %%--%%restore : Write changes in virtual stack back to original stack: Write changes in the derived virtual stack back to the original stack. (default none)   ; %%--%%restore : Write changes in virtual stack back to original stack: Write changes in the derived virtual stack back to the original stack. (default none)
   ; %%--%%ppid : Set PID of parent process: Set the PID of the parent process, used for cross platform PPID. (default -1)   ; %%--%%ppid : Set PID of parent process: Set the PID of the parent process, used for cross platform PPID. (default -1)
pipeline/utilities/e2bdb.txt · Last modified: 2019/04/02 09:20 by lusnig

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