pipeline:sort3d:start

This version (2019/04/02 12:30) is a draft.
Approvals: 0/1

Commands

Import Projection Parameters
Import projection parameters from a file to image header.
3D Variability Preprocess
Prepare your symmetric particles for variability calculations.
3D Variability Estimation
Calculate the 3D variability within your reconstruction.
3D Clustering from Iteration - SORT3D_DEPTH
Find 3D clusters within your data set by checking reproducible members using a MERIDIEN iteration.
SORT3D_DEPTH Stack Subset
Create virtual subset stack consisting from particles belong to a SORT3D_DEPTH cluster.
Local Refinement from Stack
Perform local refinement from the stack with user-provided orientation parameters.

PostRefiner
Combine unfiltered halfset volumes, then enhance the power spectrum.


Alternatives

3D Clustering from Stack - SORT3D_DEPTH
Find 3D clusters within your data set by checking reproducible members using a stack with user-provided orientation parameters.
PostRefiner (single map)
Post-refine a single map by enhancing the high frequencies (Single Map Mode)
Final 3D Reconstruction Only
Do only final 3D reconstruction using a fully finished 3D refinement iteration.


Utilities

Display Data
Displays images, volumes, or 1D plots.
Volume Adjustment
Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
Masking
Mask creation tool for 2D or 3D masks
Angular Distribution
Creates a .bild file to display the particle orientation distribution in Chimera.
Batch Pipeline Execution
Run jobs that wait with the execution on each other
  • pipeline/sort3d/start.txt
  • Last modified: 2019/04/02 12:30
  • by lusnig