pipeline:movie:sxsummovie
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pipeline:movie:sxsummovie [2018/06/20 13:12] 127.0.0.1 external edit |
pipeline:movie:sxsummovie [2018/08/22 11:48] fmerino |
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| === Main Parameters === | === Main Parameters === | ||
| ; summovie_path : Summovie executable path: Specify the file path of Summovie executable. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) | ; summovie_path : Summovie executable path: Specify the file path of Summovie executable. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) | ||
| - | ; input_micrograph_pattern : Input movie path pattern: Specify path pattern of input micrograph movies with a wild card (*). Use the wild card to indicate the place of variable part of the file names (e.g. serial number, time stamp, and etc). The path pattern must be enclosed by single quotes (') or double quotes ("). (Note: sxgui.py automatically adds single quotes (')). bdb files can not be selected as input micrograph movies. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) | + | ; input_micrograph_pattern : Input movie path pattern: Specify path pattern of input micrograph movies with a wild card (*).. The path pattern must be enclosed by single quotes (') or double quotes ("). (Note: sxgui.py automatically adds single quotes (')). bdb files cannot |
| - | ; input_shift_pattern : Input drift shift path pattern: Specify path pattern of input drift shift parameters files with a wild card (*). Use the wild card to indicate the place of variable part of the file names (e.g. serial number, time stamp, and etc). The path pattern must be enclosed by single quotes (') or double quotes ("). (Note: sxgui.py automatically adds single quotes (')). The substring at the variable part must be same between the associated pair of input micrograph and shift file. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) | + | ; input_shift_pattern : Input drift shift path pattern: Specify path pattern of input drift shift parameters files with a wild card (*).. The path pattern must be enclosed by single quotes (') or double quotes ("). (Note: sxgui.py automatically adds single quotes (')). The substring at the variable part must be same between the associated pair of input micrograph and shift file. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) |
| - | ; output_directory : Output directory: The results will be written here. This directory will be created automatically and it must not exist previously. (This argument is specific to SPHIRE, and not directly used by Summovie executable.) (default required string) | + | ; output_directory : Output directory: The results will be written here. It cannot |
| ; %%--%%selection_list : Movie selection file: Specify a name of micrograph movie selection list text file. The file extension must be ' | ; %%--%%selection_list : Movie selection file: Specify a name of micrograph movie selection list text file. The file extension must be ' | ||
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pipeline/movie/sxsummovie.txt · Last modified: 2019/04/02 10:57 by lusnig
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