pipeline:meridien:start

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pipeline:meridien:start [2018/08/22 12:31]
fmerino
pipeline:meridien:start [2019/04/02 12:20] (current)
lusnig
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   ; [[sxmeridien|Local Refinement from Iteration]] : Perform local refinement from the last fully finished 3D refinement iteration.   ; [[sxmeridien|Local Refinement from Iteration]] : Perform local refinement from the last fully finished 3D refinement iteration.
   ; [[sxmeridien|Local Refinement from Stack]] : Perform local refinement from the stack with user-provided orientation parameters.   ; [[sxmeridien|Local Refinement from Stack]] : Perform local refinement from the stack with user-provided orientation parameters.
-  ; [[sxmeridien|3D Refinement ​Continuation]] : Perform continuation run of 3D refinement ​from the last fully finished ​3D refinement ​iteration.+  ; [[sxmeridien|Restart Local Refinement]] : Restart local refinement ​after the last fully finished iteration ​of meridian run or local refinement run 
 +  ; [[sxgui_meridien|3D Refinement Assessment]] : GUI tool to assess MERIDIEN 3D Refinement outputs.
   ; [[sxmeridien|Final 3D Reconstruction Only]] : Do only final 3D reconstruction using a fully finished 3D refinement iteration.   ; [[sxmeridien|Final 3D Reconstruction Only]] : Do only final 3D reconstruction using a fully finished 3D refinement iteration.
  
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 +
 === Utilities === === Utilities ===
   ; [[pipeline:​utilities:​e2display|Display Data]] : Displays images, volumes, or 1D plots.   ; [[pipeline:​utilities:​e2display|Display Data]] : Displays images, volumes, or 1D plots.
-  ; [[pipeline:​utilities:​sxpipe_moon_eliminator|Moon Eliminator]] : Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume. +  ; [[pipeline:​utilities:​sxpipe_moon_eliminator|Volume Adjustment]] : Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume. 
-  ; [[pipeline:utilities:sxprocess|Adaptive 3D Mask]] : Generates a soft-edged mask for a given volume.+  ; [[pipeline:viper:sp_mask|Masking]] : Mask creation tool for 2D or 3D masks
   ; [[pipeline:​utilities:​sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera.   ; [[pipeline:​utilities:​sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera.
 +  ; [[pipeline:​utilities:​sxprocess|Balance Angular Distribution ]] : Balance angular distribution of projection directions by removing excess particles 
 +  ; [[pipeline:​utilities:​sp_batch|Batch Pipeline Execution]] : Run jobs that wait with the execution on each other 
 +  ; [[pipeline:​utilities:​sp_ctf_refine|CTF refine (Meridien)]] : Refine the defocus per particle 
 +  ; [[pipeline:​utilities:​sp_ctf_refine_stack|CTF refine (Stack)]] : Refine, manual, the defocus per particle
  • pipeline/meridien/start.txt
  • Last modified: 2019/04/02 12:20
  • by lusnig