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pipeline:meridien:start
The most recent version of this page is a draft.DiffThis version (2021/02/19 14:48) was approved by twagner.

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MERIDIEN

Commands

3D Refinement
Perform automatic 3D structure refinement as standard fresh run (default run).
3D Refinement Assessment
GUI tool to assess MERIDIEN 3D Refinement outputs.
PostRefiner
Combine unfiltered halfset volumes, then enhance the power spectrum.

Alternatives

Local Refinement from Iteration
Perform local refinement from the last fully finished 3D refinement iteration.
Local Refinement from Stack
Perform local refinement from the stack with user-provided orientation parameters.
Restart Local Refinement
Restart local refinement after the last fully finished iteration of meridian run or local refinement run.
3D Refinement Assessment
GUI tool to assess MERIDIEN 3D Refinement outputs.
Final 3D Reconstruction Only
Do only final 3D reconstruction using a fully finished 3D refinement iteration.

Utilities

Display Data
Displays images, volumes, or 1D plots.
Volume Adjustment
Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
Masking
Mask creation tool for 2D or 3D masks.
Angular Distribution
Creates a .bild file to display the particle orientation distribution in Chimera.
Balance Angular Distribution
Balance angular distribution of projection directions by removing excess particles.
Batch Pipeline Execution
Run jobs that wait with the execution on each other.
CTF refine (Meridien)
Refine the defocus per particle.
CTF refine (Stack)
Refine, manual, the defocus per particle.
Correct Beam Tilt
Applies beam-tilt correction to particles..
/web/sphire/www/sphire/wiki/data/pages/pipeline/meridien/start.txt ยท Last modified: 2021/03/16 10:42 by aali