pipeline:meridien:start

This version (2019/04/02 12:20) is a draft.
Approvals: 0/1

Commands

3D Refinement
Perform automatic 3D structure refinement as standard fresh run (default run).
3D Refinement Assessment
GUI tool to assess MERIDIEN 3D Refinement outputs.
PostRefiner
Combine unfiltered halfset volumes, then enhance the power spectrum.


Alternatives

Local Refinement from Iteration
Perform local refinement from the last fully finished 3D refinement iteration.
Local Refinement from Stack
Perform local refinement from the stack with user-provided orientation parameters.
Restart Local Refinement
Restart local refinement after the last fully finished iteration of meridian run or local refinement run
3D Refinement Assessment
GUI tool to assess MERIDIEN 3D Refinement outputs.
Final 3D Reconstruction Only
Do only final 3D reconstruction using a fully finished 3D refinement iteration.


Utilities

Display Data
Displays images, volumes, or 1D plots.
Volume Adjustment
Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
Masking
Mask creation tool for 2D or 3D masks
Angular Distribution
Creates a .bild file to display the particle orientation distribution in Chimera.
Balance Angular Distribution
Balance angular distribution of projection directions by removing excess particles
Batch Pipeline Execution
Run jobs that wait with the execution on each other
CTF refine (Meridien)
Refine the defocus per particle
CTF refine (Stack)
Refine, manual, the defocus per particle
  • pipeline/meridien/start.txt
  • Last modified: 2019/04/02 12:20
  • by lusnig