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pipeline:localres:sxfilterlocal [2018/08/22 10:51]
fmerino 		pipeline:localres:sxfilterlocal [2019/04/02 10:42]
lusnig [sp_filterlocal]
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 ~~NOTOC~~ ~~NOTOC~~
  
-===== sxfilterlocal ===== +===== sp_filterlocal ===== 
-3D Local Filter: Locally filter maps according to the local resolution determined by [[pipeline:localres:sxlocres|sxlocres]].+3D Local Filter: Locally filter maps according to the local resolution determined by [[pipeline:localres:sxlocres|sp_locres]].
  
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 Usage in command line Usage in command line
  
-  sxfilterlocal.py  input_volume  locres_volume  maskfile  outputfile  --radius=PARTICLE_RADIUS  --falloff=falloff  --MPI+  sp_filterlocal.py  input_volume  locres_volume  maskfile  outputfile  --radius=PARTICLE_RADIUS  --falloff=falloff  --MPI
  
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 ===== Typical usage ===== ===== Typical usage =====
  
-sxlocres exists in for both MPI and non-MPI versions.+sp_locres exists in for both MPI and non-MPI versions.
  
-  mpirun -np 32 sxfilterlocal.py refinementdir/main002/vol0.hdf locres.hdf locfilt.hdf --radius=28 --MPI+  mpirun -np 32 sp_filterlocal.py refinementdir/main002/vol0.hdf locres.hdf locfilt.hdf --radius=28 --MPI
  
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 === Main Parameters === === Main Parameters ===
   ; input_volume : Input volume: Path to input volume file containing the 3D density map. (default required string)   ; input_volume : Input volume: Path to input volume file containing the 3D density map. (default required string)
-  ; locres_volume : Local resolution file: Path to volume file containing the local resolution estimate produced by [[pipeline:localres:sxlocres|sxlocres]]. (default required string)+  ; locres_volume : Local resolution file: Path to volume file containing the local resolution estimate produced by [[pipeline:localres:sp_locres|sp_locres]]. (default required string)
   ; maskfile : 3D mask: Defines the region where the local filtering should be applied. (default none)   ; maskfile : 3D mask: Defines the region where the local filtering should be applied. (default none)
   ; outputfile : Output volume: Path to output volume file contained locally-filtered 3D density map. (default required string)   ; outputfile : Output volume: Path to output volume file contained locally-filtered 3D density map. (default required string)
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 ==== Files ==== ==== Files ====
-sparx/bin/sxfilterlocal.py+sparx/bin/sp_filterlocal.py
  
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 ==== See also ==== ==== See also ====
-[[pipeline:meridien:sxmeridien|sxmeridien]], [[[pipeline:utilities:sxprocess|sxprocess]], and [[pipeline:localres:sxlocres|sxlocres]].+[[pipeline:meridien:sp_meridien|sp_meridien]], [[[pipeline:utilities:sp_process|sp_process]], and [[pipeline:localres:sp_locres|sp_locres]].
  
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pipeline/localres/sxfilterlocal.txt · Last modified: 2019/04/02 10:42 by lusnig

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