pipeline:cter:start []

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===== CTER =====

=== Commands ===
  ; [[sxcter|CTF Estimation]] : CTF Estimation using CTER.
  ; [[sxgui_cter|CTF Assessment]] : GUI tool for assessment of micrographs based on CTER results.  

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=== Alternatives ===
  ; [[pipeline:utilities:sxpipe_resample_micrographs|Resample Micrographs]] : Resamples all micrographs inside a directory.
  
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=== Utilities ===
  ; [[pipeline:utilities:e2display|Display Data]] : Displays images, volumes, or 1D plots.
  ; [[pipeline:utilities:sxpipe_organize_micrographs|Organize Micrographs/Movies]] : Move selected micrographs/movies from source to destination directory.
  ; [[pipeline:utilities:sp_batch|Batch Pipeline Execution]] : Run jobs that wait with the execution on each other
  ; [[pipeline:utilities:sp_ctf_refine|CTF refine (Meridien)]] : Refine the defocus per particle
  ; [[pipeline:utilities:sp_ctf_refine_stack|CTF refine (Stack)]] : Refine, manual, the defocus per particle

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