Differences

This shows you the differences between two versions of the page.

--- janni_tutorial [2019/07/10 10:06]
twagner [Training a model for your data]
+++ janni_tutorial [2019/07/10 10:37]
twagner [Denoise]
@@ Line 52: / Line 52: @@
 ==== Denoise ====
-After you trained your model, you can denoise either your movies or denoise your averages directly. In our experience, denoising the motion corrected averages works better.
+With a trained model (either trained by you or the general model) you can directly denoise either your movies or averages. In our experience, denoising the motion corrected averages works better.
 To denoise a set if images you have to tell JANNI three **mandatory** arguments:
@@ Line 67: / Line 67: @@
 Here is now how you do the actual denoising:
-It is assumed that you run the command in a directory with the with your model file ''mymodel.h5'' (might have a different name in case of the [[janni#Download|general model]]). Furthermore, it is assumed that your would like denoise averages in the folder ///my/averages/// and want to write results in the folder ///my/outputdir/denoised///
+It is assumed that you run the command in a directory with your model file ''mymodel.h5'' (might have a different name in case of the [[janni#Download|general model]]). Furthermore, it is assumed that your would like denoise averages in the folder ///my/averages/// and want to write results in the folder ///my/outputdir/denoised///
 The following command will run the denoising on GPU 0: