howto:submissions
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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howto:submissions [2018/08/24 09:08] mstabrin [Slurm] |
howto:submissions [2019/06/25 19:09] mstabrin [Submit a cluster job from the GUI] |
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| This will create a file called qsub_sxisac_test.sh with the correct setup and submit it to the cluster. | This will create a file called qsub_sxisac_test.sh with the correct setup and submit it to the cluster. | ||
| + | \\ | ||
| + | This variables can be set in the environment to adjust the default values for the job submission text fields. | ||
| + | |||
| + | || **Variable** || **Description** || | ||
| + | ||SPHIRE_MPI_COMMAND_LINE_TEMPLATE || Command line template|| | ||
| + | ||SPHIRE_SUBMISSION_COMMAND || Submission command|| | ||
| + | ||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE || Submission script template|| | ||
| + | ||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE_FOLDER || Folder containing different submission script templates|| | ||
| + | ||SPHIRE_NPROC || Default number of processors|| | ||
| + | ||SPHIRE_ENABLE_QSUB || Use cluster submission by default|| | ||
| \\ | \\ | ||
| ===== Example Scripts ===== | ===== Example Scripts ===== | ||
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| Below you can find one example of the kind of submission templates that would be used for Slurm queueing system. | Below you can find one example of the kind of submission templates that would be used for Slurm queueing system. | ||
| + | On our system, we had issues with "the mpirun --map-by node" option, so we recommend to not use for now. | ||
| #!/bin/zsh | #!/bin/zsh | ||
| Line 79: | Line 90: | ||
| | | ||
| module load sphire | module load sphire | ||
| - | mpirun | + | mpirun -n XXX_SXMPI_NPROC_XXX XXX_SXCMD_LINE_XXX |
howto/submissions.txt ยท Last modified: 2019/06/25 19:09 by mstabrin
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