Differences

This shows you the differences between two versions of the page.

--- howto:submissions [2018/07/13 17:41]
mstabrin
+++ howto:submissions [2019/06/25 19:09]
mstabrin [Submit a cluster job from the GUI]
@@ Line 15: / Line 15: @@
 This will create a file called qsub_sxisac_test.sh with the correct setup and submit it to the cluster.
+\\
+This variables can be set in the environment to adjust the default values for the job submission text fields.
+|| **Variable** || **Description** ||
+||SPHIRE_MPI_COMMAND_LINE_TEMPLATE || Command line template||
+||SPHIRE_SUBMISSION_COMMAND || Submission command||
+||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE || Submission script template||
+||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE_FOLDER || Folder containing different submission script templates||
+||SPHIRE_NPROC || Default number of processors||
+||SPHIRE_ENABLE_QSUB || Use cluster submission by default||
 \\
 ===== Example Scripts =====
@@ Line 69: / Line 79: @@
 ==== Slurm ====
-Below you can find one example of the kind of submission templates that we would be used for Slurm queueing system.
+Below you can find one example of the kind of submission templates that would be used for Slurm queueing system.
+On our system, we had issues with "the mpirun --map-by node" option, so we recommend to not use for now.
   #!/bin/zsh
@@ Line 79: / Line 90: @@
   module load sphire
-  mpirun --map-by node -n XXX_SXMPI_NPROC_XXX XXX_SXCMD_LINE_XXX
+  mpirun -n XXX_SXMPI_NPROC_XXX XXX_SXCMD_LINE_XXX