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gpu_isac [2020/06/29 14:22] mstabrin [Download & Installation] |
gpu_isac [2020/08/03 13:46] fschoenfeld |
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===== Overview ===== | ===== Overview ===== | ||
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**ISAC** (Iterative Stable Alignment and Clustering) is a 2D classification algorithm to sort cryo-EM particles into classes depicting the same view of a target protein. It is based around iterations of | **ISAC** (Iterative Stable Alignment and Clustering) is a 2D classification algorithm to sort cryo-EM particles into classes depicting the same view of a target protein. It is based around iterations of | ||
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<note important> | <note important> | ||
- | **Beta version:** The currently available version of GPU ISAC is a beta version. A significantly improved and significantly faster version is being tested right now and will be released shortly. | + | **Chimera Beta:** If you are using the previously distributed GPU ISAC " |
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+ | The currently available version of GPU ISAC is a beta version. A significantly improved and significantly faster version is being tested right now and will be released shortly. | ||
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export LD_LIBRARY_PATH=/ | export LD_LIBRARY_PATH=/ | ||
- **Compile the GPU ISAC C++/CUDA library:** | - **Compile the GPU ISAC C++/CUDA library:** | ||
- | - < | + | - < |
- < | - < | ||
- **Adjust sparx libraries** to work with the C++/CUDA library we just compiled: | - **Adjust sparx libraries** to work with the C++/CUDA library we just compiled: | ||
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- **Set the correct libraries and environment: | - **Set the correct libraries and environment: | ||
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- | - < | + | - < |
- < | - < | ||
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+ | - **Bugfix for the Chimera beta:** | ||
+ | - < | ||