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gpu_isac [2020/06/18 12:23]
fschoenfeld 		gpu_isac [2020/06/18 12:25]
fschoenfeld
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   - **Adjust sparx libraries** to work with the C++/CUDA library we just compiled:   - **Adjust sparx libraries** to work with the C++/CUDA library we just compiled:
     - <code>cd ../eman2/sparx/libpy</code>     - <code>cd ../eman2/sparx/libpy</code>
-    - <code>sed -i.bkp "s|/home/schoenf/work/code/cuISAC/cuda|$(realpath ../../../cuda)|g" applications.py<code>+    - <code>sed -i.bkp "s|/home/schoenf/work/code/cuISAC/cuda|$(realpath ../../../cuda)|g" applications.py</code>
     - <code>sed -i.bkp2 's|statistics.sum_oe( data, "a", CTF, EMData(), myid=myid|statistics.sum_oe( data, "a", CTF, EMData()|g' applications.py</code>     - <code>sed -i.bkp2 's|statistics.sum_oe( data, "a", CTF, EMData(), myid=myid|statistics.sum_oe( data, "a", CTF, EMData()|g' applications.py</code>
   - **Set the correct libraries and environment:**   - **Set the correct libraries and environment:**
     - <code>cd ../bin</code> //Note: We are now in the **/eman2/sparx/bin** folder of your GPU ISAC installation folder.//     - <code>cd ../bin</code> //Note: We are now in the **/eman2/sparx/bin** folder of your GPU ISAC installation folder.//
-    - <code>ln -rs ../libpy/* .</code> Note: //Don't forget the dot at the end!//+    - <code>ln -rs ../libpy/* .</code> //Note: Don't forget the dot at the end!//
     - <code>sed -i.bkp "s|/home/schoenf/applications/sphire/v1.1/envs/sphire_1.3/bin|$(dirname $(which sphire))|g" sxisac2_gpu.py</code>     - <code>sed -i.bkp "s|/home/schoenf/applications/sphire/v1.1/envs/sphire_1.3/bin|$(dirname $(which sphire))|g" sxisac2_gpu.py</code>
     - <code>sed -i.bkp2 <nowiki>"</nowiki>s/^\(.*options, args.*\)$/\1\n    os.environ['CUDA_VISIBLE_DEVICES'] = options.gpu_devices\n    options.gpu_devices = ','.join(map(str, range(len(options.gpu_devices.split(',')))))/g<nowiki>"</nowiki> sxisac2_gpu.py</code>     - <code>sed -i.bkp2 <nowiki>"</nowiki>s/^\(.*options, args.*\)$/\1\n    os.environ['CUDA_VISIBLE_DEVICES'] = options.gpu_devices\n    options.gpu_devices = ','.join(map(str, range(len(options.gpu_devices.split(',')))))/g<nowiki>"</nowiki> sxisac2_gpu.py</code>
gpu_isac.txt ยท Last modified: 2021/05/08 00:41 by shaikh

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