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--- downloads:sphire_1_3 [2019/09/30 19:22]
shaikh [Tutorial]
+++ downloads:sphire_1_3 [2020/09/28 15:43] (current)
twagner
@@ Line 1: / Line 1: @@
-====== SPHIRE 1.3 ======
+====== SPHIRE 1.3 / EMAN 2.31 ======
-We are happy to announce the release of SPHIRE 1.3. It introduces the new refinement strategy for helical samples, integrate our stand-alone deep learning programs and adds other helpful tools.
+We are happy to announce the release of SPHIRE 1.3. It introduces the new refinement strategy for filamentous samples, integrate our stand-alone deep learning programs and adds other helpful tools.
 ==== What's new ====
 [{{ :downloads:logo_helical.png?200|Helical processing with SPHIRE 1.3}}] [{{ :downloads:defocus_refinement.png?200|Per particle CTF refinement. The image shows a refinement of appoferritin dataset with tilted stage. Each point represent a particle on the micrograph. The refined defocus values (left side) clearly shows the tilt axis.  The right side is the a error estimate for every defocus value.}}] [{{ :downloads:cryolo_logo.jpg?200|crYOLO can now directly used from SPHIRE 1.3}}]
@@ Line 28: / Line 28: @@
 The installer uses Anaconda, which should install independently of the choice of Linux distribution.  The Mac installer is experimental.
-Here are the downloads for Max and Linux:
+Here are the downloads for Mac and Linux:
-  * [[https://cryoem.bcm.edu/cryoem/static/software/release-2.3/eman2.3.linux64.sh| Linux installer]]
+  * [[https://cryoem.bcm.edu/cryoem/static/software/release-2.31/eman2.31_sphire1.3.linux64.sh| Linux installer]]
-  * [[https://cryoem.bcm.edu/cryoem/static/software/release-2.3/eman2.3.MacOS.sh| Mac installer (Expermential)]]
+  * [[https://cryoem.bcm.edu/cryoem/static/software/release-2.31/eman2.31_sphire1.3.MacOS.sh| Mac installer (Expermential)]]
 <note warning>
@@ Line 38: / Line 38: @@
 These external tools will be needed to run all tools in SPHIRE:
   * [[http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1|crYOLO download]]
-  * [[http://grigoriefflab.janelia.org/unblur|Unblur homepage]]
+  * [[http://sphire.mpg.de/wiki/doku.php?id=auto_2d_class_selection|Cinderella download]]
+  * Unblur ships with [[https://cistem.org/|cisTEM]]
 <note tip>
@@ Line 51: / Line 52: @@
   * [[https://blake.bcm.edu/emanwiki/EMAN2/Install/BinaryInstallAnaconda/2.31|SPHIRE binary installation instructions]]
   * [[https://blake.bcm.edu/emanwiki/EMAN2/COMPILE_EMAN2_ANACONDA/2.31|SPHIRE source code installation instructions]]
+Older and newer versions:
+  * [[https://blake.bcm.edu/emanwiki/EMAN2/Install|Installation instructions versions]]

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