downloads:cryolo_1

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downloads:cryolo_1 [2020/03/16 15:04]
twagner [crYOLO Boxmanager]
downloads:cryolo_1 [2020/05/25 10:14]
twagner
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 {{ :​downloads:​cryolo_logo.jpg?​600 |}} {{ :​downloads:​cryolo_logo.jpg?​600 |}}
 +<note important>​
 +
 +**DOCUMENTATION OUTDATED**
 +
 +The documentation has moved to https://​cryolo.readthedocs.io/​en/​latest/​
 +
 +</​note>​
 +
 ====== License ====== ====== License ======
  
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 You can find more technical details in our paper: You can find more technical details in our paper:
  
-Nature ​Communications Biology:+Communications Biology:
 [[https://​doi.org/​10.1038/​s42003-019-0437-z|SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM]] [[https://​doi.org/​10.1038/​s42003-019-0437-z|SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM]]
  
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 ====crYOLO==== ====crYOLO====
  
-Version: 1.5.6+Version: 1.6.1
  
-Uploaded:  ​17December 2019+Uploaded:  ​30March 2020
  
 [[https://​pypi.org/​project/​cryolo/#​files|DOWNLOAD]] [[https://​pypi.org/​project/​cryolo/#​files|DOWNLOAD]]
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 ====crYOLO boxmanager==== ====crYOLO boxmanager====
  
-Version: 1.2.9+Version: 1.3.5
  
-Uploaded: ​09December 2019+Uploaded: ​22March 2020
  
 [[https://​pypi.org/​project/​cryoloBM/#​files|DOWNLOAD]] [[https://​pypi.org/​project/​cryoloBM/#​files|DOWNLOAD]]
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 Uploaded: 16. March 2020 Uploaded: 16. March 2020
  
-[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_202020_N63.h5+[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_202002_N63.h5
 |DOWNLOAD]] ​ |DOWNLOAD]] ​
  
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 Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination
  
-Uploaded: ​15Oktober 2019+Uploaded: ​17March 2020
  
-[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201912_nn_N63.h5+[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_202003_nn_N63.h5
 |DOWNLOAD]] ​ |DOWNLOAD]] ​
  
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 ====== Installation ====== ====== Installation ======
 +
 +<note important>​
 +
 +**DOCUMENTATION OUTDATED**
 +
 +The documentation has moved to https://​cryolo.readthedocs.io/​en/​latest/​
 +
 +</​note>​
  
 **System requirements:​** **System requirements:​**
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 {{page>​pipeline:​window:​cryolo:​changelog}} {{page>​pipeline:​window:​cryolo:​changelog}}
 ====crYOLO Boxmanager==== ====crYOLO Boxmanager====
 +
 +**crYOLO Boxmanager 1.3.5**
 +  * Fixed a bug when placing, moving or deleting a box
 +  * Fixed bug of nun closing progress dialog when writing boxfiles
 +
 +**crYOLO Boxmanager 1.3.1**
 +  * Speed up boxfile import is now 2x faster compared to 1.3.0.
 +  * Big speed-up for live-preview during filtering. Should now even work with very big datasets.
 +
  
 **crYOLO Boxmanager 1.3.0** **crYOLO Boxmanager 1.3.0**
-  * Add option to plot size- and confidence distribution for cbox files. +  * Added option to plot size- and confidence distribution for cbox files. 
-  * Add slider to filter particles according their estimated size. +  * Added slider to filter particles according their estimated size. 
-  * Add addition field for the number of boxes with live update. +  * Added addition field for the number of boxes with live update
-  * Show progress-bar ​for reading and writing box-files+  * Added wildcard commandline option
 +  * Show progress-bar ​when reading and writing box-files
 +  * Various speed-ups.
  
 <hidden **Old crYOLO Boxmanager change logs**> <hidden **Old crYOLO Boxmanager change logs**>
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 </​hidden>​ </​hidden>​
 ==== General PhosaurusNet model ==== ==== General PhosaurusNet model ====
-**Version ​201912:**:+ 
 +**Version ​202002:** 
 +  * Adjusted the training data that the box sizes better reflect the particle diameter. 
 + 
 +**Version 201912:**
   * Added two more datasets.   * Added two more datasets.
  
-**Version 20190516:**:+**Version 20190516:**
   * Added four more inhouse datasets   * Added four more inhouse datasets
   * Added SNRNP (Thanks to Clement Charenton) ​   * Added SNRNP (Thanks to Clement Charenton) ​
  • downloads/cryolo_1.txt
  • Last modified: 2020/05/25 10:14
  • by twagner