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downloads:cryolo_1 [2020/02/07 13:50] twagner [Installation] |
downloads:cryolo_1 [2020/05/25 10:13] twagner [Installation] |
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+ | <note important> | ||
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+ | **NEW DOCUMENTATION** | ||
+ | |||
+ | The documentation has moved to https:// | ||
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+ | </ | ||
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====== License ====== | ====== License ====== | ||
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You can find more technical details in our paper: | You can find more technical details in our paper: | ||
- | Nature | + | Communications Biology: |
[[https:// | [[https:// | ||
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====crYOLO==== | ====crYOLO==== | ||
- | Version: 1.5.6 | + | Version: 1.6.1 |
- | Uploaded: | + | Uploaded: |
[[https:// | [[https:// | ||
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====crYOLO boxmanager==== | ====crYOLO boxmanager==== | ||
- | Version: 1.2.9 | + | Version: 1.3.5 |
- | Uploaded: | + | Uploaded: |
[[https:// | [[https:// | ||
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Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination | Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination | ||
- | Uploaded: | + | Uploaded: |
- | [[ftp:// | + | [[ftp:// |
|DOWNLOAD]] | |DOWNLOAD]] | ||
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Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination | Number of datasets: 43 real, 10 simulated, 10 particle free datasets on various grids with contamination | ||
- | Uploaded: | + | Uploaded: |
- | [[ftp:// | + | [[ftp:// |
|DOWNLOAD]] | |DOWNLOAD]] | ||
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====== Installation ====== | ====== Installation ====== | ||
+ | |||
+ | <note important> | ||
+ | |||
+ | **DOCUMENTATION OUTDATED** | ||
+ | |||
+ | The documentation has moved to https:// | ||
+ | |||
+ | </ | ||
**System requirements: | **System requirements: | ||
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</ | </ | ||
- | + | {{page>pipeline:window:cryolo:issues}} | |
- | <note important> | + | |
- | **Known issues** | + | |
- | + | ||
- | * Issue 0: Training on multiple GPUs sometimes lead to worse performance (higher loss). We currently recommend to train on single gpus. | + | |
- | * Issue 17: On the fly filtering (%%--%%otf) is slower than using it not, as the filtering is not parallelized in this case. | + | |
- | * Issue 27: Filament mode is not working with micrographs motion corrected by unblur. Will be fixed in the next release. | + | |
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**That' | **That' | ||
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{{page> | {{page> | ||
====crYOLO Boxmanager==== | ====crYOLO Boxmanager==== | ||
+ | |||
+ | **crYOLO Boxmanager 1.3.5** | ||
+ | * Fixed a bug when placing, moving or deleting a box | ||
+ | * Fixed bug of nun closing progress dialog when writing boxfiles | ||
+ | |||
+ | **crYOLO Boxmanager 1.3.1** | ||
+ | * Speed up boxfile import is now 2x faster compared to 1.3.0. | ||
+ | * Big speed-up for live-preview during filtering. Should now even work with very big datasets. | ||
+ | |||
+ | |||
+ | **crYOLO Boxmanager 1.3.0** | ||
+ | * Added option to plot size- and confidence distribution for cbox files. | ||
+ | * Added slider to filter particles according their estimated size. | ||
+ | * Added addition field for the number of boxes with live update. | ||
+ | * Added wildcard commandline option. | ||
+ | * Show progress-bar when reading and writing box-files. | ||
+ | * Various speed-ups. | ||
+ | |||
+ | <hidden **Old crYOLO Boxmanager change logs**> | ||
**crYOLO Boxmanager Version 1.2.9:** | **crYOLO Boxmanager Version 1.2.9:** | ||
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**crYOLO Boxmanager Version 1.2.8:** | **crYOLO Boxmanager Version 1.2.8:** | ||
* Add a low pass filter | * Add a low pass filter | ||
- | |||
- | <hidden **Old crYOLO Boxmanager change logs**> | ||
**crYOLO Boxmanager Version 1.2.6:** | **crYOLO Boxmanager Version 1.2.6:** | ||
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</ | </ | ||
==== General PhosaurusNet model ==== | ==== General PhosaurusNet model ==== | ||
- | **Version | + | |
+ | **Version | ||
+ | * Adjusted the training data that the box sizes better reflect the particle diameter. | ||
+ | |||
+ | **Version 201912:** | ||
* Added two more datasets. | * Added two more datasets. | ||
- | **Version 20190516:**: | + | **Version 20190516:** |
* Added four more inhouse datasets | * Added four more inhouse datasets | ||
* Added SNRNP (Thanks to Clement Charenton) | * Added SNRNP (Thanks to Clement Charenton) |