downloads:cryolo_1
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downloads:cryolo_1 [2019/03/17 20:02] twagner [Run it on the CPU] |
downloads:cryolo_1 [2019/03/18 16:05] twagner [Installation] |
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| ====crYOLO==== | ====crYOLO==== | ||
| - | Version: 1.3.0 | + | Version: 1.3.1 |
| - | Uploaded: | + | Uploaded: |
| - | [[ftp:// | + | [[ftp:// |
| ====crYOLO boxmanager==== | ====crYOLO boxmanager==== | ||
| Line 90: | Line 90: | ||
| * < | * < | ||
| * < | * < | ||
| - | * Issue 15: If the --gpu_fraction is used, crYOLO always uses GPU 0. Will be fixed in 1.3.1. | + | * <del>Issue 15: If the --gpu_fraction is used, crYOLO always uses GPU 0. Will be fixed in 1.3.1.</ |
| Line 126: | Line 126: | ||
| Install crYOLO: | Install crYOLO: | ||
| < | < | ||
| - | pip install numpy | + | conda install numpy |
| pip install cryolo-X.Y.Z.tar.gz | pip install cryolo-X.Y.Z.tar.gz | ||
| pip install cryoloBM-X.Y.Z.tar.gz | pip install cryoloBM-X.Y.Z.tar.gz | ||
| Line 139: | Line 139: | ||
| Picking with crYOLO is also quite fast on the CPU. On my local machine (Intel i9) it takes roughly 1 second per micrograph and on our low-performance notebooks (Intel i3) 4 seconds. | Picking with crYOLO is also quite fast on the CPU. On my local machine (Intel i9) it takes roughly 1 second per micrograph and on our low-performance notebooks (Intel i3) 4 seconds. | ||
| - | Training crYOLO is much more computational expensive. Training a model with 14 micrographs from scratch on my local machine take 34 minutes per epoch on the CPU. Given that you often need 25 epochs until convergence it is a task to do overnight (~ 12 hours). However, you might want to try refining the general model, which takes 12 minutes per epoch (~ 5 hours). | + | Training crYOLO is much more computational expensive. Training a model with 14 micrographs from scratch on my local machine take 34 minutes per epoch on the CPU. Given that you often need 25 epochs until convergence it is a task to do overnight (~ 12 hours). However, you might want to try [[pipeline: |
| **Here is how you prepare your crYOLO setup for using it on the CPU:** | **Here is how you prepare your crYOLO setup for using it on the CPU:** | ||
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| Use the **__'' | Use the **__'' | ||
| - | ====== Change log ===== | + | ====== Change log ====== |
| ====crYOLO==== | ====crYOLO==== | ||
| + | |||
| + | **crYOLO 1.3.1:** | ||
| + | * Fix Issue 15: -g was ignored when --gpu_fraction was used. | ||
| **crYOLO 1.3.0:** | **crYOLO 1.3.0:** | ||
downloads/cryolo_1.txt ยท Last modified: 2021/02/19 09:43 by twagner
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