User Tools

Site Tools


cryolo_reference_example

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
cryolo_reference_example [2019/04/16 16:21]
twagner [Download reference data and getting started]
cryolo_reference_example [2020/05/08 11:43]
twagner [Training]
Line 7: Line 7:
   * Titan V   * Titan V
   * Intel Core i9 7920X @ 2.90 Ghz   * Intel Core i9 7920X @ 2.90 Ghz
 +  * SSD Harddrive
 +  * crYOLO 1.5.0
  
  
Line 35: Line 37:
 ===== Training ===== ===== Training =====
  
-First, you have to warm up the network with "-g 0" I'm selection GPU 0. It takes 2 minutes 30 seconds on our reference setup: + 
-<code> +The training is done with this command:
-cryolo_train.py -c config_phosnet.json -w 5 -g 0 +
-</code> +
-The actual training is done with this command:+
 <code> <code>
-cryolo_train.py -c config_phosnet.json -w -e 10 -g 0+cryolo_train.py -c config_phosnet.json -w -e -g 0
 </code> </code>
-It needed 6 minutes 45 seconds to converge (18 epochs). The best validation loss was 0.03316. These numbers might be a little bit different on your case.+crYOLO needs 5 minutes 50 seconds to converge (5 warmup + 10 "normal" epochs). The best validation loss was 0.03042. These numbers might be a little bit different on your case.
  
 ===== Prediction ===== ===== Prediction =====
Line 50: Line 49:
 </code> </code>
  
-It picked 1617 particles on 12 micrographs in seconds. Including filtering the image and loading the model the command needed 46 seconds.+It picked 1617 particles on 12 micrographs in seconds. Including filtering the image and loading the model the command needed 38 seconds.
  
 ===== Visualize results ===== ===== Visualize results =====
cryolo_reference_example.txt · Last modified: 2020/05/08 11:43 by twagner