cryolo_archive

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cryolo_archive [2019/07/09 19:57]
twagner [crYOLO boxmanager]
cryolo_archive [2019/10/15 16:41] (current)
twagner [General PhosaursNet model]
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 ==== crYOLO ==== ==== crYOLO ====
 +No longer maintained. See pip archive
 +https://​pypi.org/​project/​cryolo/#​history
  
-=== Version: 1.3.6 ===+ 
 +<​hidden>​ 
 +**Version: 1.3.6**
  
 Uploaded: ​ 17. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded: ​ 17. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.5 ===+**Version: 1.3.5**
  
 Uploaded: ​ 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded: ​ 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.4 ===+**Version: 1.3.4**
  
 Uploaded: ​ 23. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded: ​ 23. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-===Version: 1.3.3===+**Version: 1.3.3**
  
 Uploaded: ​ 08. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded: ​ 08. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.2 ===+**Version: 1.3.2**
  
 Uploaded: ​ 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded: ​ 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.1===+**Version: 1.3.1**
  
 Uploaded: ​ 18. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_1/​cryolo-1.3.1.tar.gz|DOWNLOAD]] Uploaded: ​ 18. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_1/​cryolo-1.3.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.3.0 ===+**Version: 1.3.0**
  
 Uploaded: ​ 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_0/​cryolo-1.3.0.tar.gz|DOWNLOAD]] Uploaded: ​ 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_0/​cryolo-1.3.0.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.3 ===+**Version: 1.2.3**
  
 Uploaded: ​ 12. February 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_3/​cryolo-1.2.3.tar.gz|DOWNLOAD]] Uploaded: ​ 12. February 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_3/​cryolo-1.2.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.2 ===+**Version: 1.2.2**
  
 Uploaded: ​ 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_2/​cryolo-1.2.2.tar.gz|DOWNLOAD]] Uploaded: ​ 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_2/​cryolo-1.2.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.1 ===+**Version: 1.2.1**
  
 Uploaded: ​ 05. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_1/​cryolo-1.2.1.tar.gz|DOWNLOAD]] Uploaded: ​ 05. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_1/​cryolo-1.2.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.0 ===+**Version: 1.2.0**
  
 Uploaded: ​ 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_0/​cryolo-1.2.0.tar.gz|DOWNLOAD]] Uploaded: ​ 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_0/​cryolo-1.2.0.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.4 ===+**Version: 1.1.4**
  
 Uploaded: ​ 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_4/​cryolo-1.1.4.tar.gz|DOWNLOAD]] Uploaded: ​ 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_4/​cryolo-1.1.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.3 ===+**Version: 1.1.3**
  
 Uploaded: ​ 14. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_3/​cryolo-1.1.3.tar.gz|DOWNLOAD]] Uploaded: ​ 14. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_3/​cryolo-1.1.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.2 ===+**Version: 1.1.2**
  
 Uploaded: 12. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_2/​cryolo-1.1.2.tar.gz|DOWNLOAD]] Uploaded: 12. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_2/​cryolo-1.1.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.1 === +**Version: 1.1.1** 
 Uploaded: ​ 10. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_1/​cryolo-1.1.1.tar.gz|DOWNLOAD]] Uploaded: ​ 10. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_1/​cryolo-1.1.1.tar.gz|DOWNLOAD]]
  
-===Version: 1.1.0===+**Version: 1.1.0**
  
 Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_0/​cryolo-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_0/​cryolo-1.1.0.tar.gz|DOWNLOAD]]
  
-===Version: 1.0.4===+**Version: 1.0.4**
  
 Uploaded: ​ 13. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_4/​cryolo-1.0.4.tar.gz|DOWNLOAD]] Uploaded: ​ 13. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_4/​cryolo-1.0.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.3 ===+**Version: 1.0.3**
  
 Uploaded: ​ 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_3/​cryolo-1.0.3.tar.gz|DOWNLOAD]] Uploaded: ​ 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_3/​cryolo-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+**Version: 1.0.2**
  
 Uploaded: ​ 04. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_2/​cryolo-1.0.2.tar.gz|DOWNLOAD]] Uploaded: ​ 04. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_2/​cryolo-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.1 ===+**Version 1.0.1**
  
 Download the **crYOLO version 1.0.1** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018) Download the **crYOLO version 1.0.1** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018)
  
-=== Version 1.0.0 ===+**Version 1.0.0**
  
 Download the **crYOLO version 1.0.0** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryolo-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO version 1.0.0** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryolo-1.0.0.tar.gz|DOWNLOAD]]
  
- +</​hidden>​
-----+
  
 ==== crYOLO boxmanager ==== ==== crYOLO boxmanager ====
  
-=== Version: 1.2.2 ===+No longer maintained. See pip archive 
 +https://​pypi.org/​project/​cryoloBM/#​history 
 +<​hidden>​ 
 +**Version: 1.2.2 **
  
 Uploaded: 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_2/​cryoloBM-1.2.2.tar.gz|DOWNLOAD]] Uploaded: 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_2/​cryoloBM-1.2.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.1 ===+** Version: 1.2.1 **
  
 Uploaded: 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_1/​cryoloBM-1.2.1.tar.gz|DOWNLOAD]] Uploaded: 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_1/​cryoloBM-1.2.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.0 ===+** Version: 1.2.0 **
  
 Uploaded: 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2/​cryoloBM-1.2.tar.gz|DOWNLOAD]] Uploaded: 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2/​cryoloBM-1.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.1 ===+** Version: 1.1.1 **
  
 Uploaded: 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_1/​cryoloBM-1.1.1.tar.gz|DOWNLOAD]] Uploaded: 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_1/​cryoloBM-1.1.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.0 ===+** Version: 1.1.0 **
  
 Uploaded: 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_0/​cryoloBM-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_0/​cryoloBM-1.1.0.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.4 ===+** Version: 1.0.4 **
  
 Uploaded: 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_4/​cryoloBM-1.0.4.tar.gz|DOWNLOAD]] Uploaded: 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_4/​cryoloBM-1.0.4.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.3 ===+** Version: 1.0.3 **
  
 Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_3/​cryoloBM-1.0.3.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_3/​cryoloBM-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+** Version: 1.0.2 **
  
 Uploaded: 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_2/​cryoloBM-1.0.2.tar.gz|DOWNLOAD]] Uploaded: 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_2/​cryoloBM-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.1 ===+** Version: 1.0.1 **
  
 Uploaded: 03. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryoloBM-1.0.1.tar.gz|DOWNLOAD]] Uploaded: 03. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryoloBM-1.0.1.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.0 === +** Version 1.0.0 **
 Download the **crYOLO boxmanager 1.0.0** here: [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryoloBM-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO boxmanager 1.0.0** here: [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryoloBM-1.0.0.tar.gz|DOWNLOAD]]
 +</​hidden>​
  
 +==== General PhosaursNet model ===
  
-----+=== Version 201909 === 
 +Number of datasets: 40 real, 10 simulated, 10 particle free datasets on various grids with contamination
  
-==== General PhosaursNet model ===+cryo (low-pass): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201909.h5 
 +|DOWNLOAD]]  
 + 
 +cryo (janni): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201909_nn_denoise.h5 
 +|DOWNLOAD]]  
 + 
 +=== Version 20190516 ​=== 
 + 
 + 
 +38 real, 10 simulated, 10 particle free datasets on various grids with contamination 
 + 
 +cryo (low-pass): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_20190516.h5 
 +|DOWNLOAD]]  
 + 
 +Config is the same as in version 20191221.  
 + 
 +cryo (janni): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201907_nn_denoise.h5 
 +|DOWNLOAD]]  
 +<code .json> 
 +    { 
 +    "​model"​ : { 
 +        "​architecture": ​        "​PhosaurusNet",​ 
 +        "​input_size": ​          ​1024,​ 
 +        "​anchors": ​             [205,​205],​ 
 +        "​max_box_per_image": ​   700, 
 +        "​num_patches": ​         1, 
 +        "​filter": ​              ​["​gmodel_janni_20190703.h5",​24,​3,"​tmp_filtered_nn"​] 
 +      } 
 +    } 
 +</​code>​
  
 === Version 20190314 === === Version 20190314 ===
  • cryolo_archive.1562695051.txt.gz
  • Last modified: 2019/07/09 19:57
  • by twagner