cryolo_archive

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cryolo_archive [2019/02/12 08:58]
twagner
cryolo_archive [2019/10/15 16:41] (current)
twagner [General PhosaursNet model]
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 ==== crYOLO ==== ==== crYOLO ====
 +No longer maintained. See pip archive
 +https://​pypi.org/​project/​cryolo/#​history
  
-=== Version: 1.2.2 ===+ 
 +<​hidden>​ 
 +**Version: 1.3.6** 
 + 
 +Uploaded: ​ 17. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_6/​cryolo-1.3.6.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.5** 
 + 
 +Uploaded: ​ 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_5/​cryolo-1.3.5.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.4** 
 + 
 +Uploaded: ​ 23. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_4/​cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.3** 
 + 
 +Uploaded: ​ 08. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_3/​cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.2** 
 + 
 +Uploaded: ​ 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_2/​cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.1** 
 + 
 +Uploaded: ​ 18. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_1/​cryolo-1.3.1.tar.gz|DOWNLOAD]] 
 + 
 +**Version: 1.3.0** 
 + 
 +Uploaded: ​ 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_3_0/​cryolo-1.3.0.tar.gz|DOWNLOAD]] 
 + 
 +**Version: 1.2.3** 
 + 
 +Uploaded: ​ 12. February 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_3/​cryolo-1.2.3.tar.gz|DOWNLOAD]] 
 + 
 +**Version: 1.2.2**
  
 Uploaded: ​ 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_2/​cryolo-1.2.2.tar.gz|DOWNLOAD]] Uploaded: ​ 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_2/​cryolo-1.2.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.1 ===+**Version: 1.2.1**
  
 Uploaded: ​ 05. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_1/​cryolo-1.2.1.tar.gz|DOWNLOAD]] Uploaded: ​ 05. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_1/​cryolo-1.2.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.0 ===+**Version: 1.2.0**
  
 Uploaded: ​ 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_0/​cryolo-1.2.0.tar.gz|DOWNLOAD]] Uploaded: ​ 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_2_0/​cryolo-1.2.0.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.4 ===+**Version: 1.1.4**
  
 Uploaded: ​ 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_4/​cryolo-1.1.4.tar.gz|DOWNLOAD]] Uploaded: ​ 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_4/​cryolo-1.1.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.3 ===+**Version: 1.1.3**
  
 Uploaded: ​ 14. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_3/​cryolo-1.1.3.tar.gz|DOWNLOAD]] Uploaded: ​ 14. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_3/​cryolo-1.1.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.2 ===+**Version: 1.1.2**
  
 Uploaded: 12. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_2/​cryolo-1.1.2.tar.gz|DOWNLOAD]] Uploaded: 12. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_2/​cryolo-1.1.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.1 === +**Version: 1.1.1** 
 Uploaded: ​ 10. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_1/​cryolo-1.1.1.tar.gz|DOWNLOAD]] Uploaded: ​ 10. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_1/​cryolo-1.1.1.tar.gz|DOWNLOAD]]
  
-===Version: 1.1.0===+**Version: 1.1.0**
  
 Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_0/​cryolo-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_1_0/​cryolo-1.1.0.tar.gz|DOWNLOAD]]
  
-===Version: 1.0.4===+**Version: 1.0.4**
  
 Uploaded: ​ 13. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_4/​cryolo-1.0.4.tar.gz|DOWNLOAD]] Uploaded: ​ 13. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_4/​cryolo-1.0.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.3 ===+**Version: 1.0.3**
  
 Uploaded: ​ 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_3/​cryolo-1.0.3.tar.gz|DOWNLOAD]] Uploaded: ​ 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_3/​cryolo-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+**Version: 1.0.2**
  
 Uploaded: ​ 04. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_2/​cryolo-1.0.2.tar.gz|DOWNLOAD]] Uploaded: ​ 04. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_2/​cryolo-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.1 ===+**Version 1.0.1**
  
 Download the **crYOLO version 1.0.1** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018) Download the **crYOLO version 1.0.1** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018)
  
-=== Version 1.0.0 ===+**Version 1.0.0**
  
 Download the **crYOLO version 1.0.0** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryolo-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO version 1.0.0** here : [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryolo-1.0.0.tar.gz|DOWNLOAD]]
  
- +</​hidden>​
-----+
  
 ==== crYOLO boxmanager ==== ==== crYOLO boxmanager ====
  
-=== Version: 1.1.0 ===+No longer maintained. See pip archive 
 +https://​pypi.org/​project/​cryoloBM/#​history 
 +<​hidden>​ 
 +**Version: 1.2.2 ** 
 + 
 +Uploaded: 03. May 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_2/​cryoloBM-1.2.2.tar.gz|DOWNLOAD]] 
 + 
 +** Version: 1.2.1 ** 
 + 
 +Uploaded: 05. April 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2_1/​cryoloBM-1.2.1.tar.gz|DOWNLOAD]] 
 + 
 +** Version: 1.2.0 ** 
 + 
 +Uploaded: 14. March 2019 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_2/​cryoloBM-1.2.tar.gz|DOWNLOAD]] 
 + 
 +** Version: 1.1.1 ** 
 + 
 +Uploaded: 21. December 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_1/​cryoloBM-1.1.1.tar.gz|DOWNLOAD]] 
 + 
 +** Version: 1.1.0 **
  
 Uploaded: 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_0/​cryoloBM-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 27. November 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_1_0/​cryoloBM-1.1.0.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.4 ===+** Version: 1.0.4 **
  
 Uploaded: 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_4/​cryoloBM-1.0.4.tar.gz|DOWNLOAD]] Uploaded: 18. September 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_4/​cryoloBM-1.0.4.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.3 ===+** Version: 1.0.3 **
  
 Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_3/​cryoloBM-1.0.3.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_3/​cryoloBM-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+** Version: 1.0.2 **
  
 Uploaded: 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_2/​cryoloBM-1.0.2.tar.gz|DOWNLOAD]] Uploaded: 09. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_BM_V1_0_2/​cryoloBM-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.1 ===+** Version: 1.0.1 **
  
 Uploaded: 03. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryoloBM-1.0.1.tar.gz|DOWNLOAD]] Uploaded: 03. July 2018 [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_1/​cryoloBM-1.0.1.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.0 === +** Version 1.0.0 **
 Download the **crYOLO boxmanager 1.0.0** here: [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryoloBM-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO boxmanager 1.0.0** here: [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO_V1_0_0/​cryoloBM-1.0.0.tar.gz|DOWNLOAD]]
 +</​hidden>​
 +
 +==== General PhosaursNet model ===
 +
 +=== Version 201909 ===
 +Number of datasets: 40 real, 10 simulated, 10 particle free datasets on various grids with contamination
 +
 +cryo (low-pass): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201909.h5
 +|DOWNLOAD]] ​
 +
 +cryo (janni): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201909_nn_denoise.h5
 +|DOWNLOAD]] ​
 +
 +=== Version 20190516 ===
 +
 +
 +38 real, 10 simulated, 10 particle free datasets on various grids with contamination
 +
 +cryo (low-pass): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_20190516.h5
 +|DOWNLOAD]] ​
 +
 +Config is the same as in version 20191221. ​
 +
 +cryo (janni): [[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_201907_nn_denoise.h5
 +|DOWNLOAD]] ​
 +<code .json>
 +    {
 +    "​model"​ : {
 +        "​architecture": ​        "​PhosaurusNet",​
 +        "​input_size": ​          1024,
 +        "​anchors": ​             [205,205],
 +        "​max_box_per_image": ​   700,
 +        "​num_patches": ​         1,
 +        "​filter": ​              ​["​gmodel_janni_20190703.h5",​24,​3,"​tmp_filtered_nn"​]
 +      }
 +    }
 +</​code>​
 +
 +=== Version 20190314 ===
 +
 +[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_20190314.h5
 +|DOWNLOAD]] (Uploaded: 14. March 2019) Number of datasets: 32 real, 10 simulated, 10 particle free datasets on various grids with contaminations.
 +
 +Config is the same as in version 20191221.
 +
 +=== Version 20190218 ===
 +
 +[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_20190218_loss0042.h5 |DOWNLOAD]] (Uploaded: 18. February 2019) Number of datasets: 30 real, 10 simulated, 10 particle free datasets on various grids with contaminations
 +
 +Config is the same as in version 20191221.
  
 +=== Version 20191221 ===
  
-----+[[ftp://​ftp.gwdg.de/​pub/​misc/​sphire/​crYOLO-GENERAL-MODELS/​gmodel_phosnet_20181221_loss0037.h5 
 +|DOWNLOAD]] (Uploaded: 21. December 2018)  Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids
  
 +<code json config.json>​
 +    {
 +    "​model"​ : {
 +        "​architecture": ​        "​PhosaurusNet",​
 +        "​input_size": ​          1024,
 +        "​anchors": ​             [205,205],
 +        "​max_box_per_image": ​   700,
 +        "​num_patches": ​         1,
 +        "​filter": ​              ​[0.1,"​tmp_filtered"​]
 +      }
 +    }
 +</​code>​
  
 ==== General model YOLO patched mode ==== ==== General model YOLO patched mode ====
  • cryolo_archive.1549958302.txt.gz
  • Last modified: 2019/02/12 08:58
  • by twagner