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cryolo_archive [2019/05/17 08:20]
twagner [General PhosaursNet model]
cryolo_archive [2019/10/15 16:41]
twagner [General PhosaursNet model]
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 ==== crYOLO ==== ==== crYOLO ====
 +No longer maintained. See pip archive
 +https://pypi.org/project/cryolo/#history
  
-=== Version: 1.3.4 ===+ 
 +<hidden> 
 +**Version: 1.3.6** 
 + 
 +Uploaded:  17. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_6/cryolo-1.3.6.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_6/cryolo-1.3.6.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.5** 
 + 
 +Uploaded:  03. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_5/cryolo-1.3.5.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_5/cryolo-1.3.5.dev0.tar.gz|DOWNLOAD CPU VERSION]] 
 + 
 +**Version: 1.3.4**
  
 Uploaded:  23. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded:  23. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-===Version: 1.3.3===+**Version: 1.3.3**
  
 Uploaded:  08. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded:  08. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.2 ===+**Version: 1.3.2**
  
 Uploaded:  05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]] Uploaded:  05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]]
  
-=== Version: 1.3.1===+**Version: 1.3.1**
  
 Uploaded:  18. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_1/cryolo-1.3.1.tar.gz|DOWNLOAD]] Uploaded:  18. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_1/cryolo-1.3.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.3.0 ===+**Version: 1.3.0**
  
 Uploaded:  14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_0/cryolo-1.3.0.tar.gz|DOWNLOAD]] Uploaded:  14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_0/cryolo-1.3.0.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.3 ===+**Version: 1.2.3**
  
 Uploaded:  12. February 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_3/cryolo-1.2.3.tar.gz|DOWNLOAD]] Uploaded:  12. February 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_3/cryolo-1.2.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.2 ===+**Version: 1.2.2**
  
 Uploaded:  21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_2/cryolo-1.2.2.tar.gz|DOWNLOAD]] Uploaded:  21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_2/cryolo-1.2.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.1 ===+**Version: 1.2.1**
  
 Uploaded:  05. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_1/cryolo-1.2.1.tar.gz|DOWNLOAD]] Uploaded:  05. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_1/cryolo-1.2.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.0 ===+**Version: 1.2.0**
  
 Uploaded:  27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_0/cryolo-1.2.0.tar.gz|DOWNLOAD]] Uploaded:  27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_0/cryolo-1.2.0.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.4 ===+**Version: 1.1.4**
  
 Uploaded:  18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_4/cryolo-1.1.4.tar.gz|DOWNLOAD]] Uploaded:  18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_4/cryolo-1.1.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.3 ===+**Version: 1.1.3**
  
 Uploaded:  14. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_3/cryolo-1.1.3.tar.gz|DOWNLOAD]] Uploaded:  14. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_3/cryolo-1.1.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.2 ===+**Version: 1.1.2**
  
 Uploaded: 12. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_2/cryolo-1.1.2.tar.gz|DOWNLOAD]] Uploaded: 12. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_2/cryolo-1.1.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.1 === +**Version: 1.1.1** 
 Uploaded:  10. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_1/cryolo-1.1.1.tar.gz|DOWNLOAD]] Uploaded:  10. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_1/cryolo-1.1.1.tar.gz|DOWNLOAD]]
  
-===Version: 1.1.0===+**Version: 1.1.0**
  
 Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_0/cryolo-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_0/cryolo-1.1.0.tar.gz|DOWNLOAD]]
  
-===Version: 1.0.4===+**Version: 1.0.4**
  
 Uploaded:  13. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_4/cryolo-1.0.4.tar.gz|DOWNLOAD]] Uploaded:  13. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_4/cryolo-1.0.4.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.3 ===+**Version: 1.0.3**
  
 Uploaded:  09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_3/cryolo-1.0.3.tar.gz|DOWNLOAD]] Uploaded:  09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_3/cryolo-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+**Version: 1.0.2**
  
 Uploaded:  04. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_2/cryolo-1.0.2.tar.gz|DOWNLOAD]] Uploaded:  04. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_2/cryolo-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.1 ===+**Version 1.0.1**
  
 Download the **crYOLO version 1.0.1** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018) Download the **crYOLO version 1.0.1** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018)
  
-=== Version 1.0.0 ===+**Version 1.0.0**
  
 Download the **crYOLO version 1.0.0** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryolo-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO version 1.0.0** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryolo-1.0.0.tar.gz|DOWNLOAD]]
  
- +</hidden>
-----+
  
 ==== crYOLO boxmanager ==== ==== crYOLO boxmanager ====
  
 +No longer maintained. See pip archive
 +https://pypi.org/project/cryoloBM/#history
 +<hidden>
 +**Version: 1.2.2 **
  
-=== Version: 1.2.1 ===+Uploaded: 03. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2_2/cryoloBM-1.2.2.tar.gz|DOWNLOAD]] 
 + 
 +** Version: 1.2.1 **
  
 Uploaded: 05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2_1/cryoloBM-1.2.1.tar.gz|DOWNLOAD]] Uploaded: 05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2_1/cryoloBM-1.2.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.2.0 ===+** Version: 1.2.0 **
  
 Uploaded: 14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2/cryoloBM-1.2.tar.gz|DOWNLOAD]] Uploaded: 14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2/cryoloBM-1.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.1 ===+** Version: 1.1.1 **
  
 Uploaded: 21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_1/cryoloBM-1.1.1.tar.gz|DOWNLOAD]] Uploaded: 21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_1/cryoloBM-1.1.1.tar.gz|DOWNLOAD]]
  
-=== Version: 1.1.0 ===+** Version: 1.1.0 **
  
 Uploaded: 27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_0/cryoloBM-1.1.0.tar.gz|DOWNLOAD]] Uploaded: 27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_0/cryoloBM-1.1.0.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.4 ===+** Version: 1.0.4 **
  
 Uploaded: 18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_4/cryoloBM-1.0.4.tar.gz|DOWNLOAD]] Uploaded: 18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_4/cryoloBM-1.0.4.tar.gz|DOWNLOAD]]
  
  
-=== Version: 1.0.3 ===+** Version: 1.0.3 **
  
 Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_3/cryoloBM-1.0.3.tar.gz|DOWNLOAD]] Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_3/cryoloBM-1.0.3.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.2 ===+** Version: 1.0.2 **
  
 Uploaded: 09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_2/cryoloBM-1.0.2.tar.gz|DOWNLOAD]] Uploaded: 09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_2/cryoloBM-1.0.2.tar.gz|DOWNLOAD]]
  
-=== Version: 1.0.1 ===+** Version: 1.0.1 **
  
 Uploaded: 03. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryoloBM-1.0.1.tar.gz|DOWNLOAD]] Uploaded: 03. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryoloBM-1.0.1.tar.gz|DOWNLOAD]]
  
-=== Version 1.0.0 === +** Version 1.0.0 **
 Download the **crYOLO boxmanager 1.0.0** here: [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryoloBM-1.0.0.tar.gz|DOWNLOAD]] Download the **crYOLO boxmanager 1.0.0** here: [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryoloBM-1.0.0.tar.gz|DOWNLOAD]]
 +</hidden>
  
 +==== General PhosaursNet model ===
  
-----+=== Version 201909 === 
 +Number of datasets: 40 real, 10 simulated, 10 particle free datasets on various grids with contamination
  
-==== General PhosaursNet model ===+cryo (low-pass): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201909.h5 
 +|DOWNLOAD]]  
 + 
 +cryo (janni): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201909_nn_denoise.h5 
 +|DOWNLOAD]]  
 + 
 +=== Version 20190516 === 
 + 
 + 
 +38 real, 10 simulated, 10 particle free datasets on various grids with contamination 
 + 
 +cryo (low-pass): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_20190516.h5 
 +|DOWNLOAD]]  
 + 
 +Config is the same as in version 20191221.  
 + 
 +cryo (janni): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201907_nn_denoise.h5 
 +|DOWNLOAD]]  
 +<code .json> 
 +    { 
 +    "model" : { 
 +        "architecture":         "PhosaurusNet", 
 +        "input_size":           1024, 
 +        "anchors":              [205,205], 
 +        "max_box_per_image":    700, 
 +        "num_patches":          1, 
 +        "filter":               ["gmodel_janni_20190703.h5",24,3,"tmp_filtered_nn"
 +      } 
 +    } 
 +</code>
  
 === Version 20190314 === === Version 20190314 ===
cryolo_archive.txt · Last modified: 2019/10/15 16:41 by twagner