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cinderella_micrographs

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 cinderella_micrographs [2019/12/10 09:21]twagner [Training] cinderella_micrographs [2020/08/28 07:35]twagner [Training] Both sides previous revision Previous revision 2020/08/28 07:35 twagner [Training] 2020/08/28 07:35 twagner [Training] 2020/08/28 07:34 twagner [Training] 2020/08/28 07:34 twagner 2019/12/10 09:22 twagner [Training] 2019/12/10 09:21 twagner [Training] 2019/12/10 09:20 twagner [Training] 2019/12/10 09:18 twagner [Classify] 2019/12/10 09:07 twagner [How to use SPHIRE's Cinderella for micrograph selection] 2019/12/10 09:06 twagner 2019/12/10 09:02 twagner 2019/12/10 08:58 twagner 2019/12/10 08:51 twagner 2019/12/10 08:51 twagner [How to use SPHIRE's Cinderella for micrograph selection] 2019/12/10 08:45 twagner 2019/12/10 08:44 twagner created Next revision Previous revision 2020/08/28 07:35 twagner [Training] 2020/08/28 07:35 twagner [Training] 2020/08/28 07:34 twagner [Training] 2020/08/28 07:34 twagner 2019/12/10 09:22 twagner [Training] 2019/12/10 09:21 twagner [Training] 2019/12/10 09:20 twagner [Training] 2019/12/10 09:18 twagner [Classify] 2019/12/10 09:07 twagner [How to use SPHIRE's Cinderella for micrograph selection] 2019/12/10 09:06 twagner 2019/12/10 09:02 twagner 2019/12/10 08:58 twagner 2019/12/10 08:51 twagner 2019/12/10 08:51 twagner [How to use SPHIRE's Cinderella for micrograph selection] 2019/12/10 08:45 twagner 2019/12/10 08:44 twagner created Line 15: Line 15: **How many micrographs do I need?** **How many micrographs do I need?** - Good question. + We typically start with 30 good and 30 bad micrographs. Line 38: Line 38: } } - The fields have the following meaning: + The fields in the section **model** have the following meaning: * **input_size**: This is the image size to which each micrograph is resized to. * **input_size**: This is the image size to which each micrograph is resized to. - * **batch_size**: How many micrograph are in one mini-batch. If you have memory problems, you can try to reduce this value. + * **mask_radius**: (Optional) Circular mask radius which is applied after resizing to the input size. If not given, it uses 0.4 * **input_size** as default. + + The fields in the section **train** have the following meaning: + * **batch_size**: How many micrographs are in one mini-batch. If you have memory problems, you can try to reduce this value. * **good_path**: Path to folder with good micrographs. * **good_path**: Path to folder with good micrographs. * **bad_path**: Path to folder with bad micrographs. * **bad_path**: Path to folder with bad micrographs.
cinderella_micrographs.txt · Last modified: 2020/08/28 07:35 by twagner