This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
auto_2d_class_selection [2019/12/16 10:44] twagner [Cinderella: Deep learning based binary classification tool] |
auto_2d_class_selection [2020/03/03 12:31] twagner [Tutorial] |
||
---|---|---|---|
Line 10: | Line 10: | ||
Our binary classification | Our binary classification | ||
For class averages, it supports .hdf/.mrcs, for micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file. | For class averages, it supports .hdf/.mrcs, for micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file. | ||
- | Cinderella | + | Cinderella was written to automate cryo-em data processing. |
+ | We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). | ||
< | < | ||
Line 17: | Line 18: | ||
</ | </ | ||
- | Here are a couple of examples for good / bad classes in Cinderella: | + | |
+ | ====== 2D class selection model ====== | ||
+ | Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?" | ||
{{ :: | {{ :: | ||
- | ====== 2D class selection model ====== | ||
- | Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?" | ||
<note important> | <note important> | ||
The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them. | The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them. | ||
Line 105: | Line 106: | ||
====== Tutorial ====== | ====== Tutorial ====== | ||
- | We created | + | We created |
* [[auto2d_tutorial|How to use Cinderella for 2D class selection]] | * [[auto2d_tutorial|How to use Cinderella for 2D class selection]] |