auto_2d_class_selection

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auto_2d_class_selection [2019/12/16 10:43]
twagner
auto_2d_class_selection [2019/12/16 14:07]
twagner [2D class selection model]
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-Our binary classification ​ tool (**Cinderella**) is based on a deep learning network to 2D classes, micrographs or subtomograms into good and bad categories. +Our binary classification ​ tool (**Cinderella**) is based on a deep learning network to classify class averages, micrographs or subtomograms into good and bad categories. 
-For 2D classes, it supports .hdf/.mrcs, for micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file. +For class averages, it supports .hdf/.mrcs, for micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file. 
-Cinderella ​provides a pretrained general model for classifying 2D classes and was written to automate cryo-em data processing. It's open source and easy to use ([[auto2d_tutorial|see tutorial]]). ​You can easily train it with your own set of classes/​micrographs.+Cinderella was written to automate cryo-em data processing. ​ It's open source and easy to use
 +We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). ​But you can easily train it with your own set of classes/​micrographs/​subtomograms.
  
 <​note>​ <​note>​
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 </​note>​ </​note>​
  
-Here are a couple of examples for good / bad classes in Cinderella: ​+ 
 +====== 2D class selection model ====== 
 +Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?"​ to decide which is a good class. ​Here are a couple of examples for good / bad classes in Cinderella: ​
  
 {{ ::​cinderellea.png?​450 |}} {{ ::​cinderellea.png?​450 |}}
  
-====== 2D class selection model ====== 
-Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?"​ to decide which is a good class. 
 <note important>​ <note important>​
 The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them. The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them.
  • auto_2d_class_selection.txt
  • Last modified: 2020/08/27 15:11
  • by twagner