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auto_2d_class_selection [2019/12/16 10:42]
twagner 		auto_2d_class_selection [2020/03/03 12:31]
twagner [Tutorial]
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- +Our binary classification  tool (**Cinderella**) is based on a deep learning network to classify class averages, micrographs or subtomograms into good and bad categories. 
-Our 2d class and micrograph selection tool (**Cinderella**) is based on a deep learning network to separate 2D classes or micrographs into good and bad.  +For class averages, it supports .hdf/.mrcs, for micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file. 
-For 2D classes, it supports .hdf/.mrcs and for micrographs .mrc format.  +Cinderella was written to automate cryo-em data processing.  It's open source and easy to use. 
-Cinderella provides a pretrained general model for classifying 2D classes and was written to automate cryo-em data processing. It's open source and easy to use ([[auto2d_tutorial|see tutorial]]). You can easily train it with your own set of classes/micrographs.+We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). But you can easily train it with your own set of classes/micrographs/subtomograms.
  
 <note> <note>
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 </note> </note>
  
-Here are a couple of examples for good / bad classes in Cinderella: + 
 +====== 2D class selection model ====== 
 +Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?" to decide which is a good class. Here are a couple of examples for good / bad classes in Cinderella: 
  
 {{ ::cinderellea.png?450 |}} {{ ::cinderellea.png?450 |}}
  
-====== 2D class selection model ====== 
-Our model was trained on a set of 2D classes from ISAC. During the creation of the training dataset, I tried to ask myself "Which class would I select If I would not know the particle?" to decide which is a good class. 
 <note important> <note important>
 The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them. The training dataset does **not contain any Relion classes**, so it might be that Cinderella will not work with well them.
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 ====== Tutorial ====== ====== Tutorial ======
-We created two tutorials:+We created three tutorials:
  
   * [[auto2d_tutorial|How to use Cinderella for 2D class selection]]   * [[auto2d_tutorial|How to use Cinderella for 2D class selection]]
auto_2d_class_selection.txt · Last modified: 2020/08/27 15:11 by twagner

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