==== crYOLO ====
No longer maintained. See pip archive
https://pypi.org/project/cryolo/#history


<hidden>
**Version: 1.3.6**

Uploaded:  17. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_6/cryolo-1.3.6.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_6/cryolo-1.3.6.dev0.tar.gz|DOWNLOAD CPU VERSION]]

**Version: 1.3.5**

Uploaded:  03. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_5/cryolo-1.3.5.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_5/cryolo-1.3.5.dev0.tar.gz|DOWNLOAD CPU VERSION]]

**Version: 1.3.4**

Uploaded:  23. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_4/cryolo-1.3.4.dev0.tar.gz|DOWNLOAD CPU VERSION]]

**Version: 1.3.3**

Uploaded:  08. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.tar.gz|DOWNLOAD GPU VERSION]][[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_3/cryolo-1.3.3.dev0.tar.gz|DOWNLOAD CPU VERSION]]

**Version: 1.3.2**

Uploaded:  05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.tar.gz|DOWNLOAD GPU VERSION]] [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_2/cryolo-1.3.2.dev0.tar.gz|DOWNLOAD CPU VERSION]]

**Version: 1.3.1**

Uploaded:  18. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_1/cryolo-1.3.1.tar.gz|DOWNLOAD]]

**Version: 1.3.0**

Uploaded:  14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_3_0/cryolo-1.3.0.tar.gz|DOWNLOAD]]

**Version: 1.2.3**

Uploaded:  12. February 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_3/cryolo-1.2.3.tar.gz|DOWNLOAD]]

**Version: 1.2.2**

Uploaded:  21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_2/cryolo-1.2.2.tar.gz|DOWNLOAD]]

**Version: 1.2.1**

Uploaded:  05. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_1/cryolo-1.2.1.tar.gz|DOWNLOAD]]

**Version: 1.2.0**

Uploaded:  27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_2_0/cryolo-1.2.0.tar.gz|DOWNLOAD]]

**Version: 1.1.4**

Uploaded:  18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_4/cryolo-1.1.4.tar.gz|DOWNLOAD]]

**Version: 1.1.3**

Uploaded:  14. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_3/cryolo-1.1.3.tar.gz|DOWNLOAD]]

**Version: 1.1.2**

Uploaded: 12. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_2/cryolo-1.1.2.tar.gz|DOWNLOAD]]

**Version: 1.1.1**

Uploaded:  10. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_1/cryolo-1.1.1.tar.gz|DOWNLOAD]]

**Version: 1.1.0**

Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_1_0/cryolo-1.1.0.tar.gz|DOWNLOAD]]

**Version: 1.0.4**

Uploaded:  13. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_4/cryolo-1.0.4.tar.gz|DOWNLOAD]]

**Version: 1.0.3**

Uploaded:  09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_3/cryolo-1.0.3.tar.gz|DOWNLOAD]]

**Version: 1.0.2**

Uploaded:  04. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_2/cryolo-1.0.2.tar.gz|DOWNLOAD]]

**Version 1.0.1**

Download the **crYOLO version 1.0.1** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryolo-1.0.1.tar.gz|DOWNLOAD]] (UPDATED at 03. July 2018)

**Version 1.0.0**

Download the **crYOLO version 1.0.0** here : [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryolo-1.0.0.tar.gz|DOWNLOAD]]

</hidden>

==== crYOLO boxmanager ====

No longer maintained. See pip archive
https://pypi.org/project/cryoloBM/#history
<hidden>
**Version: 1.2.2 **

Uploaded: 03. May 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2_2/cryoloBM-1.2.2.tar.gz|DOWNLOAD]]

** Version: 1.2.1 **

Uploaded: 05. April 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2_1/cryoloBM-1.2.1.tar.gz|DOWNLOAD]]

** Version: 1.2.0 **

Uploaded: 14. March 2019 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_2/cryoloBM-1.2.tar.gz|DOWNLOAD]]

** Version: 1.1.1 **

Uploaded: 21. December 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_1/cryoloBM-1.1.1.tar.gz|DOWNLOAD]]

** Version: 1.1.0 **

Uploaded: 27. November 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_1_0/cryoloBM-1.1.0.tar.gz|DOWNLOAD]]


** Version: 1.0.4 **

Uploaded: 18. September 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_4/cryoloBM-1.0.4.tar.gz|DOWNLOAD]]


** Version: 1.0.3 **

Uploaded: 23. August 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_3/cryoloBM-1.0.3.tar.gz|DOWNLOAD]]

** Version: 1.0.2 **

Uploaded: 09. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_BM_V1_0_2/cryoloBM-1.0.2.tar.gz|DOWNLOAD]]

** Version: 1.0.1 **

Uploaded: 03. July 2018 [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_1/cryoloBM-1.0.1.tar.gz|DOWNLOAD]]

** Version 1.0.0 **
Download the **crYOLO boxmanager 1.0.0** here: [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryoloBM-1.0.0.tar.gz|DOWNLOAD]]
</hidden>

==== General PhosaursNet model ===

=== Version 201909 ===
Number of datasets: 40 real, 10 simulated, 10 particle free datasets on various grids with contamination

cryo (low-pass): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201909.h5
|DOWNLOAD]] 

cryo (janni): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201909_nn_denoise.h5
|DOWNLOAD]] 

=== Version 20190516 ===


38 real, 10 simulated, 10 particle free datasets on various grids with contamination

cryo (low-pass): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_20190516.h5
|DOWNLOAD]] 

Config is the same as in version 20191221. 

cryo (janni): [[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_201907_nn_denoise.h5
|DOWNLOAD]] 
<code .json>
    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               ["gmodel_janni_20190703.h5",24,3,"tmp_filtered_nn"]
      }
    }
</code>

=== Version 20190314 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_20190314.h5
|DOWNLOAD]] (Uploaded: 14. March 2019) Number of datasets: 32 real, 10 simulated, 10 particle free datasets on various grids with contaminations.

Config is the same as in version 20191221.

=== Version 20190218 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_20190218_loss0042.h5 |DOWNLOAD]] (Uploaded: 18. February 2019) Number of datasets: 30 real, 10 simulated, 10 particle free datasets on various grids with contaminations

Config is the same as in version 20191221.

=== Version 20191221 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_phosnet_20181221_loss0037.h5
|DOWNLOAD]] (Uploaded: 21. December 2018)  Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

<code json config.json>
    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               [0.1,"tmp_filtered"]
      }
    }
</code>

==== General model YOLO patched mode ====

=== Version 20181127 ===



[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_yolo_20181127_1100.h5|DOWNLOAD]] (Uploaded: 27. November 2018) Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

<code json config.json>
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "overlap_patches":      200,
        "max_box_per_image":    700,
        "num_patches":          2,
        "filter":               [0.1,"tmp_filtered"]
    }
}
</code>

=== Version 20180823 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_yolo_20180823_0806_loss_0059.h5|DOWNLOAD]] 
(Uploaded: 23. August 2018) Number of real handpicked datasets included: 25  (+8 particle free datasets on various grids)

Compatible config:
<code json config.json>
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "overlap_patches":      200,
        "num_patches":          3
    }
}
</code>

=== Version 20180720 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_yolo_20180720_1643_loss0061.h5|DOWNLOAD]] (Uploaded: 20. July 2018)
Number of real handpicked datasets included: 20

Compatible config:
<code json config.json>
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}
</code>
=== Version 20180704 ===

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO-GENERAL-MODELS/gmodel_yolo_20180704_0113_loss_0047.h5|DOWNLOAD]] (Uploaded: 04. July 2018)
Number of real handpicked datasets included: 14 

Compatible config:
<code json config.json>
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [160,160],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}
</code>


=== Version 20180621 ===
Number of real handpicked datasets included: 10

Uploaded: 28. June 2018 

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/gmodel_yolo_20180621_0940_loss_0051.h5|DOWNLOAD]] 

==== General crYOLO network model ====


Number of real handpicked datasets included: 10

Uploaded: 28. June 2018

[[ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/gmodel_cryolo_20180621_0734_loss_0102.h5|DOWNLOAD]] 

<code json config.json>
{
    "model" : {
        "​architecture": ​        "​crYOLO",​ 	
        "​input_size": ​          ​1024,​
        "​anchors": ​             [160,​160],​
        "​max_box_per_image": ​   600 
    }
}
</code>

Info: Trained on cryo images, therefore negative stain will not work.