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--- pipeline:window:cryolo [2019/09/17 13:39]
twagner [Configuration]
+++ pipeline:window:cryolo [2019/09/17 13:40]
twagner [Advanced parameters]
@@ Line 320: / Line 320: @@
 {{page>pipeline:window:cryolo:visualize}}
-===== Evaluate your results =====
-{{page>pipeline:window:cryolo:evaluate_results}}
-===== Advanced parameters =====
-During **training** (//cryolo_train//), there are the following advanced parameters:
-  * //%%--%%warm_restarts//: With this option the learning rate is decreasing after each epoch and then reset after a couple of epochs.
-  * //%%--%%num_cpu NUMBER_OF_CPUS//: Number of CPU cores used during training
-  * //%%--%%gpu_fraction FRACTION//: Number between 0 - 1 quantifying the fraction of GPU memory that is reserved by crYOLO
-  * //%%--%%skip_augmentation//: Set this flaq, if crYOLO should skip the data augmentation (not recommended).
-  * //%%--%%fine_tune//: With this flag, crYOLO will only train the last layers (fine tune)
-  * //%%-%%lft NUM_LAYER_FINETUNE//: Numbers of layers to fine tune (default is 2).
-During **picking** (//cryolo_predict//), there are these advanced parameters:
-  * //-t CONFIDENCE_THRESHOLD//: With the -t parameter, you can let the crYOLO pick more conservative (e.g by adding -t 0.4 to the picking command) or less conservative (e.g by adding -t 0.2 to the picking command). The valid parameter range is 0 to 1.
-  * //-d DISTANCE_IN_PIXEL//: With the -d parameter you can filter your picked particles. Boxes with a distance (pixel) less than this value will be removed.
-  * //-pbs PREDICTION_BATCH_SIZE//: With the -pbs parameter you can set the number of images picked as batch. Default is 3.
-  * //%%--%%otf//: Instead of saving the filtered images into an seperate directory, crYOLO will filter them on-the-fly and don't write them to disk.
-  * //%%--%%num_cpu NUMBER_OF_CPUS//: Number of CPU cores used during prediction
-  * //%%--%%gpu_fraction FRACTION//: Number between 0 -1 quantifying the fraction of GPU memory that is reserved by crYOLO.
-  * //%%--%%monitor//: With this flaq, crYOLO will monitor your input directory and pick images as they appear in the directory. The monitor mode can be stopped by writing the empty file STOP.CRYOLO (( you can create it with <code>touch STOP.CRYOLO</code> )) into the input directory.
-  * //-sr SEARCH_RANGE_FACTOR//: (FILAMENT MODE) The search range for connecting boxes is the box size times this factor. Default is 1.41
 ===== Help =====

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