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pipeline:window:cryolo [2019/09/13 09:49] twagner [Installation] |
pipeline:window:cryolo [2019/09/14 10:11] twagner |
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You can find the download and installation instructions here: [[howto: | You can find the download and installation instructions here: [[howto: | ||
- | ===== General description | + | ===== Tutorials |
+ | |||
+ | Depending what you want to do, you can follow one of these Tutorials: | ||
+ | |||
+ | - I would like to train a model from scratch for picking my particles | ||
+ | - I would like to train a model from scratch for picking filaments. | ||
+ | - I would like to refine a general model for my particles. | ||
+ | |||
+ | The **first and the second tutorial** are the most common use cases and well tested. The **third tutorial** is still experimental but might give you better results in less time or less training data. | ||
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+ | |||
===== Picking particles - Using a model trained for your data ===== | ===== Picking particles - Using a model trained for your data ===== | ||
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One may ask how many micrographs have to be picked? It depends! Typically 10 micrographs are a good start. However, that number may increase / decrease due to several factors: | One may ask how many micrographs have to be picked? It depends! Typically 10 micrographs are a good start. However, that number may increase / decrease due to several factors: | ||
* A very heterogenous background could make it necessary to pick more micrographs. | * A very heterogenous background could make it necessary to pick more micrographs. | ||
+ | * When you refine a general model, you might need to pick less micrographs. | ||
* If your micrograph is only sparsely decorated, you may need to pick more micrographs. | * If your micrograph is only sparsely decorated, you may need to pick more micrographs. | ||
- | We recommend that you start with 10 micrographs, | + | |
+ | We recommend that you start with 10 micrographs, | ||
{{: | {{: | ||
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Now create a third folder with the name '' | Now create a third folder with the name '' | ||
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+ | ==== Start crYOLO ==== | ||
+ | {{page> | ||
==== Configuration ==== | ==== Configuration ==== | ||
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**Alternative: | **Alternative: | ||
- | Since crYOLO 1.4 you can also use neural network denoising with [[: | + | Since crYOLO 1.4 you can also use neural network denoising with [[: |
To use JANNI' | To use JANNI' | ||
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Our general models can be found and downloaded here: [[howto: | Our general models can be found and downloaded here: [[howto: | ||
+ | |||
+ | ==== Start crYOLO ==== | ||
+ | {{page> | ||
+ | |||
==== Configuration==== | ==== Configuration==== | ||
The next step is to create a configuration file. Type: | The next step is to create a configuration file. Type: |